Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1T42 BPC Identified: 112 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 1T42 1!B:6!C G:C WC [cWW][XIX] 10.81 48.41; 52.13 3.72 -8.77 0.41 8.25
Group_I_RNA 1T42 5!B:5!C G:C WC [cWW][XIX] 10.82 50.46; 53.55 3.09 -7.62 0.11 8.05
Group_I_RNA 1T42 6!B:4!C C:G WC [cWW][XIX] 11.01 46.94; 45.97 0.98 -6.18 0.5 1.31
Group_I_RNA 1T42 7!B:3!C C:G WC [cWW][XIX] 10.66 51.39; 53.49 2.1 -7.34 0.16 9.7
Group_I_RNA 1T42 8!B:2!C G:C WC [cWW][XIX] 10.56 48.27; 53.65 5.38 -13.82 0.3 14.9
Group_I_RNA 1T42 9!B:1!C U:A WC [cWW][XX] 10.69 49.47; 52.23 2.76 -11.7 0.49 14.83
Group_I_RNA 1T42 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 5.95 107.0; 153.25 46.25 -74.84 0.02 44.34
Group_I_RNA 1T42 10!B:1!D G:U Wb [cWW][XXVIII] 10.63 36.94; 60.87 23.93 -19.92 0.46 10.25
Group_I_RNA 1T42 10!B:87!B G:A rS [tSS][-] 8.03 74.19; 88.29 14.1 150.58 0.32 35.09
Group_I_RNA 1T42 10!B:58!B G:A pfS(sb:O2*-N3) [---][-] 5.63 137.34; 93.44 43.9 -63.61 1.18 42.27
Group_I_RNA 1T42 11!B:2!D U:A WC [cWW][XX] 10.61 53.23; 54.91 1.68 -14.31 0.18 10.95
Group_I_RNA 1T42 12!B:3!D G:C WC [cWW][XIX] 10.53 52.72; 53.89 1.17 -7.99 0.27 8.9
Group_I_RNA 1T42 12!B:168!B G:A rpS [cSS][-] 6.94 103.13; 133.54 30.41 -46.19 1.1 18.74
Group_I_RNA 1T42 13!B:167!B C:A rpS(sb:O2*-N3) [cSS][-] 5.77 134.74; 96.42 38.32 -77.93 0.49 41.05
Group_I_RNA 1T42 13!B:37!B C:G WC [cWW][XIX] 10.56 53.7; 52.08 1.62 -17.32 0.18 18.85
Group_I_RNA 1T42 14!B:39!B C:A pfS [cSW][-] 9.57 132.51; 28.53 103.98 -20.4 0.22 29.49
Group_I_RNA 1T42 14!B:36!B C:G WC [cWW][XIX] 10.81 53.87; 49.39 4.48 -11.17 0.28 10.3
Group_I_RNA 1T42 15!B:35!B U:A WC [cWW][XX] 10.93 47.85; 52.42 4.57 -17.78 0.26 17.01
Group_I_RNA 1T42 16!B:34!B U:A WC [cWW][XX] 10.62 55.78; 52.47 3.31 -4.12 0.47 6.93
Group_I_RNA 1T42 17!B:33!B G:C WC [cWW][XIX] 10.92 49.24; 49.28 0.04 -5.71 0.58 20.6
Group_I_RNA 1T42 18!B:32!B C:G WC [cWW][XIX] 10.44 57.58; 59.58 2.0 -9.52 0.53 28.64
Group_I_RNA 1T42 19!B:31!B G:C WC [cWW][XIX] 10.35 58.18; 57.77 0.41 -11.39 0.44 21.34
Group_I_RNA 1T42 22!B:29!B G:C WC [cWW][XIX] 11.14 50.62; 47.47 3.16 0.34 0.04 9.33
Group_I_RNA 1T42 23!B:28!B G:C WC [cWW][XIX] 10.8 54.47; 57.55 3.07 0.75 0.06 3.31
Group_I_RNA 1T42 24!B:27!B G:A S [tSH][XI] 9.3 98.04; 10.55 87.49 -94.17 0.04 13.86
Group_I_RNA 1T42 25!B:161!B A:A rWb* [tWW][I] 13.88 23.71; 32.13 8.42 126.9 0.39 18.17
Group_I_RNA 1T42 26!B:148!B A:U rpS(sb:O2*-N3) [cSS][-] 5.53 105.77; 142.13 36.35 -55.67 0.61 28.78
Group_I_RNA 1T42 27!B:163!B A:G rS [tSS][-] 7.76 66.29; 86.27 19.98 163.52 1.54 20.1
Group_I_RNA 1T42 27!B:147!B A:C rpS(bs:O2-O2*) [cSS][-] 5.69 157.63; 99.49 58.13 -64.53 0.19 28.86
Group_I_RNA 1T42 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 5.18 156.55; 161.13 4.58 -121.02 0.22 19.52
Group_I_RNA 1T42 36!B:38!B G:G pS_1 [cSH][-] 9.18 118.65; 23.52 95.13 -30.56 0.6 42.46
Group_I_RNA 1T42 41!B:143!B G:C WC [cWW][XIX] 10.43 57.07; 59.34 2.28 8.78 0.65 0.74
Group_I_RNA 1T42 42!B:142!B G:C WC [cWW][XIX] 10.46 57.33; 59.77 2.45 3.62 0.25 8.29
Group_I_RNA 1T42 43!B:141!B U:A WC [cWW][XX] 10.34 56.52; 57.35 0.82 4.83 0.49 4.15
Group_I_RNA 1T42 44!B:140!B G:C WC [cWW][XIX] 10.28 58.31; 59.25 0.94 -0.81 0.05 32.49
Group_I_RNA 1T42 45!B:139!B U:G Wb [cWW][XXVIII] 10.17 68.95; 50.08 18.87 -11.33 0.17 25.19
Group_I_RNA 1T42 46!B:138!B C:G WC [cWW][XIX] 10.83 50.09; 54.16 4.07 -15.02 0.34 17.78
Group_I_RNA 1T42 46!B:97!B C:A rpS(sb:O2*-N3) [cSS][-] 5.25 138.34; 94.79 43.54 -74.49 0.29 28.01
Group_I_RNA 1T42 47!B:136!B A:A rH [tWH][V] 12.04 33.42; 20.01 13.41 -146.0 0.39 16.41
Group_I_RNA 1T42 48!B:96!B A:C rpS(sb:O2*-N3) [cSS][-] 5.68 90.69; 154.85 64.16 -47.24 1.14 29.79
Group_I_RNA 1T42 49!B:123!B A:G rS [tSS][-] 8.57 60.35; 87.48 27.13 163.23 0.42 13.53
Group_I_RNA 1T42 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 5.5 149.37; 108.01 41.36 -41.86 1.01 6.37
Group_I_RNA 1T42 51!B:93!B U:A WC [cWW][XX] 9.8 60.97; 62.43 1.47 3.3 0.82 20.59
Group_I_RNA 1T42 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 8.95 17.43; 146.45 129.02 32.82 1.04 7.53
Group_I_RNA 1T42 52!B:92!B C:G WC [cWW][XIX] 10.4 57.63; 56.69 0.94 -6.56 0.51 2.6
Group_I_RNA 1T42 53!B:91!B G:C WC [cWW][XIX] 10.66 53.7; 56.2 2.5 6.98 0.13 6.33
Group_I_RNA 1T42 54!B:90!B G:C WC [cWW][XIX] 10.29 55.61; 58.81 3.2 12.11 0.83 5.48
Group_I_RNA 1T42 55!B:89!B C:G WC [cWW][XIX] 10.59 54.84; 51.4 3.44 8.95 0.16 9.6
Group_I_RNA 1T42 56!B:88!B G:C WC [cWW][XIX] 10.2 57.28; 56.79 0.49 0.35 0.3 29.84
Group_I_RNA 1T42 58!B:86!B A:A S [tSH][-] 9.26 2.22; 88.52 86.3 94.34 0.51 2.41
Group_I_RNA 1T42 59!B:85!B A:C Wb [cWW][-] 11.15 26.72; 58.46 31.73 -2.88 0.97 24.68
Group_I_RNA 1T42 60!B:84!B C:G WC [cWW][XIX] 10.77 50.25; 52.83 2.57 -13.34 0.88 26.95
Group_I_RNA 1T42 61!B:192!C C:A rpS(bs:O2-O2*) [cSS][-] 5.93 100.2; 162.79 62.59 -56.19 0.14 23.87
Group_I_RNA 1T42 61!B:83!B C:G WC [cWW][XIX] 10.64 54.95; 50.59 4.36 0.73 0.38 10.42
Group_I_RNA 1T42 62!B:191!C U:A rpS(sb:O2*-N3) [cSS][-] 5.64 150.66; 94.12 56.54 -78.19 0.42 30.56
Group_I_RNA 1T42 62!B:81!B U:A rH_1 [tWH][XXIV] 9.32 38.54; 12.49 26.05 162.23 0.06 18.01
Group_I_RNA 1T42 65!B:80!B G:U Wb [cWW][XXVIII] 10.75 43.03; 61.2 18.17 -11.63 0.33 5.89
Group_I_RNA 1T42 66!B:79!B C:G WC [cWW][XIX] 10.38 53.81; 53.2 0.61 -4.31 0.14 15.38
Group_I_RNA 1T42 67!B:78!B G:C WC [cWW][XIX] 10.62 54.18; 53.25 0.93 -7.98 0.06 9.59
Group_I_RNA 1T42 68!B:77!B C:G WC [cWW][XIX] 10.66 54.32; 52.54 1.78 -7.5 0.13 9.25
Group_I_RNA 1T42 69!B:76!B C:G WC [cWW][XIX] 10.61 57.81; 47.1 10.71 -10.29 0.06 9.76
Group_I_RNA 1T42 70!B:75!B C:G WC [cWW][XIX] 10.55 58.23; 51.51 6.72 -2.05 0.1 6.04
Group_I_RNA 1T42 81!B:190!B A:A rWb* [tWW][I] 14.11 34.51; 33.35 1.16 117.69 0.62 33.37
Group_I_RNA 1T42 83!B:192!C G:A rS [tSS][-] 7.75 83.46; 67.99 15.48 172.68 0.16 28.19
Group_I_RNA 1T42 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 6.04 157.65; 147.7 9.95 -126.22 1.2 37.8
Group_I_RNA 1T42 87!B:1!D A:U rpS(bs:O2-O2*) [---][-] 6.46 147.51; 106.14 41.37 -115.1 0.36 35.83
Group_I_RNA 1T42 91!B:126!B C:U rS* [tHH][-] 12.52 14.46; 15.93 1.46 -80.17 0.1 24.5
Group_I_RNA 1T42 92!B:125!B G:G S_1 [tSH][-] 11.39 9.27; 86.42 77.14 25.52 1.06 8.06
Group_I_RNA 1T42 93!B:125!B A:G S [tSH][XI] 10.6 22.22; 105.22 83.0 -10.44 1.4 7.54
Group_I_RNA 1T42 94!B:124!B G:U Wb [cWW][XXVIII] 10.35 39.56; 70.58 31.02 -14.51 0.02 17.3
Group_I_RNA 1T42 95!B:123!B C:G WC [cWW][XIX] 10.56 54.57; 56.25 1.68 -7.45 0.38 15.16
Group_I_RNA 1T42 96!B:122!B C:G WC [cWW][XIX] 10.64 54.09; 55.64 1.55 -7.19 0.06 9.0
Group_I_RNA 1T42 98!B:139!B A:G rS [tSS][-] 7.85 53.73; 95.5 41.77 180.0 0.64 20.94
Group_I_RNA 1T42 98!B:121!B A:A Wb [cWW][-] 13.61 25.38; 52.17 26.79 -0.38 0.9 30.51
Group_I_RNA 1T42 100!B:119!B C:G WC [cWW][XIX] 10.91 45.11; 53.07 7.96 -4.98 1.03 24.8
Group_I_RNA 1T42 101!B:118!B U:U Wb [cWW][XVI] 9.45 41.31; 59.9 18.59 -14.55 0.39 16.72
Group_I_RNA 1T42 102!B:117!B U:A WC [cWW][XX] 10.73 52.62; 56.65 4.03 -2.01 0.11 16.25
Group_I_RNA 1T42 103!B:116!B C:G WC [cWW][XIX] 10.79 50.36; 55.15 4.79 -6.78 0.75 3.28
Group_I_RNA 1T42 104!B:115!B G:C WC [cWW][XIX] 11.11 48.83; 47.46 1.36 1.8 0.52 7.19
Group_I_RNA 1T42 105!B:114!B C:G WC [cWW][XIX] 10.15 58.96; 58.93 0.03 9.4 0.73 23.14
Group_I_RNA 1T42 106!B:113!B A:U WC [cWW][XX] 10.29 58.14; 57.36 0.78 -4.73 1.27 41.24
Group_I_RNA 1T42 107!B:112!B G:C WC [cWW][XIX] 10.73 54.96; 52.99 1.97 10.89 0.76 24.86
Group_I_RNA 1T42 1001!B:1014!B C:G WC [cWW][XIX] 10.87 52.59; 51.65 0.94 -0.8 0.12 2.7
Group_I_RNA 1T42 1002!B:1013!B C:G WC [cWW][XIX] 10.75 53.42; 52.87 0.55 -3.49 0.05 5.06
Group_I_RNA 1T42 128!B:178!B G:C WC [cWW][XIX] 10.73 49.26; 53.78 4.52 -15.31 0.89 7.71
Group_I_RNA 1T42 129!B:178!B A:C S [tSH][-] 9.55 11.98; 95.44 83.45 -47.74 0.34 34.66
Group_I_RNA 1T42 130!B:206!C G:G H_1 [cWH][VI] 11.28 31.79; 61.4 29.61 -2.06 0.64 22.43
Group_I_RNA 1T42 130!B:177!B G:C WC [cWW][XIX] 10.48 53.13; 59.31 6.19 -2.29 0.14 8.47
Group_I_RNA 1T42 131!B:176!B A:U WC [cWW][XX] 10.17 60.06; 57.92 2.15 2.82 0.03 7.16
Group_I_RNA 1T42 132!B:175!B C:G WC [cWW][XIX] 10.5 57.94; 55.19 2.76 4.58 0.01 4.19
Group_I_RNA 1T42 133!B:174!B U:A WC [cWW][XX] 10.86 53.57; 44.75 8.82 -22.27 0.24 28.42
Group_I_RNA 1T42 134!B:173!B A:U WC [cWW][XX] 10.83 51.72; 52.78 1.07 -7.79 0.33 13.68
Group_I_RNA 1T42 144!B:166!B C:G WC [cWW][XIX] 10.75 54.1; 53.69 0.42 4.64 0.05 12.62
Group_I_RNA 1T42 145!B:165!B A:U WC [cWW][XX] 10.4 57.29; 56.77 0.52 -1.09 0.69 10.57
Group_I_RNA 1T42 146!B:164!B C:G WC [cWW][XIX] 10.56 56.48; 53.53 2.96 -6.35 0.04 11.02
Group_I_RNA 1T42 147!B:163!B C:G WC [cWW][XIX] 10.49 53.88; 54.17 0.28 -9.22 0.0 9.78
Group_I_RNA 1T42 148!B:161!B U:A rH_1 [tWH][XXIV] 9.71 33.43; 14.65 18.78 142.69 0.22 13.39
Group_I_RNA 1T42 150!B:162!B A:U WC [cWW][XX] 10.84 46.27; 49.52 3.25 20.34 0.29 28.42
Group_I_RNA 1T42 151!B:160!B G:U Wb [cWW][XXVIII] 10.81 34.76; 58.37 23.61 -12.64 0.21 10.36
Group_I_RNA 1T42 152!B:159!B G:C WC [cWW][XIX] 10.4 55.75; 56.03 0.28 -11.6 0.46 18.86
Group_I_RNA 1T42 153!B:158!B C:G WC [cWW][XIX] 10.62 55.78; 55.24 0.55 -0.27 0.0 5.71
Group_I_RNA 1T42 168!B:3!D A:C fS(sb:O2*-N1)_1 [tSS][-] 8.67 53.89; 93.01 39.12 175.18 0.14 14.77
Group_I_RNA 1T42 179!B:205!C A:A H_2 [---][-] 11.37 26.3; 40.55 14.25 0.83 0.38 12.11
Group_I_RNA 1T42 180!B:204!C G:C WC [cWW][XIX] 10.6 55.45; 54.71 0.75 -8.48 0.03 4.09
Group_I_RNA 1T42 181!B:203!C G:C WC [cWW][XIX] 10.43 54.94; 53.82 1.12 -13.3 0.27 12.62
Group_I_RNA 1T42 184!B:197!C G:C WC [cWW][XIX] 10.69 53.17; 51.73 1.44 7.35 0.35 15.33
Group_I_RNA 1T42 185!B:196!C U:A WC [cWW][XX] 10.49 53.1; 53.12 0.02 2.19 1.19 13.41
Group_I_RNA 1T42 186!B:195!C G:C WC [cWW][XIX] 10.75 56.4; 55.21 1.19 -5.02 0.3 21.58
Group_I_RNA 1T42 187!B:194!C G:C WC [cWW][XIX] 10.65 52.97; 55.18 2.21 -6.8 0.03 21.15
Group_I_RNA 1T42 188!B:193!C C:G WC [cWW][XIX] 10.88 54.86; 47.03 7.83 -2.79 0.17 7.5
Group_I_RNA 1T42 189!B:192!C G:A S [tSH][XI] 9.24 92.84; 13.66 79.17 -98.6 0.59 16.79
Group_I_RNA 1T42 206!C:1!C G:A rS(sp:O2*-O2P) [---][-] 9.78 152.84; 118.46 34.38 3.75 0.81 10.47