Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1TFW
BPC Identified: 30
Ambiguities: 0
tRNA |
1TFW, |
1!E:72!H |
G:C |
WC [cWW][XIX] |
10.74 |
51.79; 55.1 |
3.31 |
-17.97 |
0.35 |
15.67 |
tRNA |
1TFW, |
2!E:71!H |
C:G |
WC [cWW][XIX] |
10.73 |
51.75; 55.16 |
3.4 |
-12.84 |
0.44 |
20.12 |
tRNA |
1TFW, |
3!E:70!H |
G:C |
WC [cWW][XIX] |
10.71 |
52.44; 54.41 |
1.97 |
-16.43 |
0.22 |
16.45 |
tRNA |
1TFW, |
4!E:69!H |
G:C |
WC [cWW][XIX] |
10.81 |
52.59; 55.53 |
2.94 |
-14.25 |
0.24 |
13.92 |
tRNA |
1TFW, |
5!E:68!H |
A:U |
WC [cWW][XX] |
10.74 |
52.92; 51.8 |
1.12 |
-12.47 |
0.09 |
20.4 |
tRNA |
1TFW, |
6!E:67!H |
U:A |
WC [cWW][XX] |
10.26 |
63.3; 55.48 |
7.81 |
-13.24 |
0.05 |
17.95 |
tRNA |
1TFW, |
7!E:66!H |
C:G |
WC [cWW][XIX] |
10.68 |
61.18; 51.95 |
9.23 |
-10.46 |
0.35 |
14.71 |
tRNA |
1TFW, |
8!E:65!H |
C:G |
WC [cWW][XIX] |
10.53 |
60.6; 56.71 |
3.89 |
-13.49 |
0.26 |
19.73 |
tRNA |
1TFW, |
9!E:64!H |
G:C |
WC [cWW][XIX] |
10.7 |
53.81; 55.92 |
2.12 |
-15.32 |
0.16 |
20.75 |
tRNA |
1TFW, |
10!E:63!H |
C:G |
WC [cWW][XIX] |
10.82 |
56.73; 54.21 |
2.52 |
-16.38 |
0.09 |
21.04 |
tRNA |
1TFW, |
1!F:72!I |
G:C |
WC [cWW][XIX] |
10.89 |
49.66; 52.55 |
2.89 |
-15.45 |
0.34 |
15.05 |
tRNA |
1TFW, |
2!F:71!I |
C:G |
WC [cWW][XIX] |
10.85 |
52.39; 52.62 |
0.24 |
-14.41 |
0.43 |
21.93 |
tRNA |
1TFW, |
3!F:70!I |
G:C |
WC [cWW][XIX] |
10.65 |
53.85; 61.57 |
7.72 |
-14.17 |
0.33 |
14.32 |
tRNA |
1TFW, |
4!F:69!I |
G:C |
WC [cWW][XIX] |
11.28 |
50.8; 47.58 |
3.22 |
-16.85 |
0.01 |
20.36 |
tRNA |
1TFW, |
5!F:68!I |
A:U |
WC [cWW][XX] |
10.48 |
56.22; 57.64 |
1.42 |
-17.07 |
0.48 |
18.84 |
tRNA |
1TFW, |
6!F:67!I |
C:A |
WC [---][-] |
10.12 |
60.69; 59.73 |
0.97 |
-18.09 |
0.15 |
23.48 |
tRNA |
1TFW, |
7!F:66!I |
C:G |
WC [cWW][XIX] |
10.49 |
63.95; 54.37 |
9.59 |
-12.59 |
0.35 |
13.01 |
tRNA |
1TFW, |
8!F:65!I |
C:G |
WC [cWW][XIX] |
10.7 |
56.3; 50.78 |
5.52 |
-10.22 |
0.21 |
20.65 |
tRNA |
1TFW, |
9!F:64!I |
G:C |
WC [cWW][XIX] |
10.7 |
58.51; 53.16 |
5.35 |
-10.42 |
0.39 |
18.7 |
tRNA |
1TFW, |
10!F:63!I |
C:G |
WC [cWW][XIX] |
10.52 |
60.44; 58.32 |
2.13 |
-16.65 |
0.42 |
16.74 |
tRNA |
1TFW, |
3!G:70!J |
C:G |
WC [cWW][XIX] |
10.93 |
54.95; 57.36 |
2.41 |
-15.58 |
0.48 |
21.09 |
tRNA |
1TFW, |
4!G:69!J |
G:C |
WC [cWW][XIX] |
10.73 |
53.29; 51.88 |
1.41 |
-17.73 |
0.5 |
25.17 |
tRNA |
1TFW, |
5!G:68!J |
G:C |
WC [cWW][XIX] |
10.77 |
53.27; 50.78 |
2.49 |
-11.87 |
0.15 |
13.37 |
tRNA |
1TFW, |
6!G:67!J |
A:U |
WC [cWW][XX] |
10.55 |
54.05; 55.19 |
1.13 |
-15.61 |
0.09 |
17.67 |
tRNA |
1TFW, |
7!G:66!J |
U:A |
WC [cWW][XX] |
10.69 |
53.68; 52.01 |
1.67 |
-17.27 |
0.22 |
21.69 |
tRNA |
1TFW, |
8!G:65!J |
C:G |
WC [cWW][XIX] |
10.78 |
51.65; 49.65 |
2.0 |
-11.08 |
0.09 |
15.29 |
tRNA |
1TFW, |
9!G:64!J |
C:G |
WC [cWW][XIX] |
10.66 |
53.98; 53.44 |
0.53 |
-14.26 |
0.15 |
15.46 |
tRNA |
1TFW, |
10!G:63!J |
G:C |
WC [cWW][XIX] |
10.68 |
53.25; 53.7 |
0.45 |
-16.19 |
0.06 |
17.12 |
tRNA |
1TFW, |
11!G:62!J |
C:G |
WC [cWW][XIX] |
10.56 |
56.05; 54.33 |
1.72 |
-17.86 |
0.08 |
17.4 |
tRNA |
1TFW, |
12!G:61!J |
A:C |
WC [---][-] |
11.0 |
49.59; 45.57 |
4.02 |
-7.53 |
0.42 |
12.39 |