Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1TRA BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 1TRA 1!A:72!A G:C WC [cWW][XIX] 10.51 49.91; 61.36 11.46 1.7 0.35 8.64
tRNA 1TRA 2!A:71!A C:G WC [cWW][XIX] 10.65 55.52; 54.29 1.23 0.09 0.43 7.33
tRNA 1TRA 3!A:70!A G:C WC [cWW][XIX] 10.63 62.21; 53.4 8.8 -3.6 0.17 10.54
tRNA 1TRA 4!A:69!A G:U Wb [cWW][XXVIII] 10.45 42.35; 69.56 27.21 -3.97 0.22 16.01
tRNA 1TRA 5!A:68!A A:U WC [cWW][XX] 10.65 53.58; 55.83 2.25 -0.42 0.47 12.31
tRNA 1TRA 6!A:67!A U:A WC [cWW][XX] 10.48 56.78; 53.85 2.93 -8.26 0.1 18.77
tRNA 1TRA 7!A:66!A U:A WC [cWW][XX] 10.87 54.6; 52.4 2.2 0.14 0.14 5.14
tRNA 1TRA 8!A:14!A U:A rH_1 [tWH][XXIV] 9.32 30.33; 27.77 2.56 163.57 0.45 11.35
tRNA 1TRA 9!A:23!A A:A rS* [tHH][-] 11.05 14.26; 11.41 2.85 123.55 0.23 15.7
tRNA 1TRA 10!A:25!A G:C WC [cWW][XIX] 10.69 50.46; 58.9 8.44 -4.5 0.39 17.75
tRNA 1TRA 11!A:24!A C:G WC [cWW][XIX] 10.65 48.07; 55.18 7.1 -19.48 0.0 24.82
tRNA 1TRA 12!A:23!A U:A WC [cWW][XX] 11.19 48.28; 50.89 2.61 -5.5 0.04 6.56
tRNA 1TRA 13!A:22!A C:G WC [cWW][XIX] 10.83 49.03; 53.78 4.75 -12.99 0.2 14.24
tRNA 1TRA 15!A:48!A G:C rWb [tWW][XXII] 10.09 38.01; 69.69 31.68 -178.16 0.13 3.06
tRNA 1TRA 18!A:55!A G:U fS_PSU [---][-] 8.52 32.22; 131.29 99.07 -128.93 0.48 18.55
tRNA 1TRA 19!A:56!A G:C WC [cWW][XIX] 10.18 54.38; 52.72 1.66 -25.31 0.73 38.59
tRNA 1TRA 22!A:46!A G:G rH_1 [tWH][VII] 10.84 32.44; 29.58 2.87 -174.09 0.23 5.51
tRNA 1TRA 26!A:44!A G:A rWb* [---][-] 12.54 43.49; 46.64 3.15 -8.93 0.18 36.38
tRNA 1TRA 27!A:43!A C:G WC [cWW][XIX] 10.72 47.23; 54.01 6.77 -14.83 0.07 20.72
tRNA 1TRA 28!A:42!A C:G WC [cWW][XIX] 10.75 52.9; 49.43 3.47 -11.05 0.04 14.48
tRNA 1TRA 29!A:41!A A:U WC [cWW][XX] 10.4 53.93; 58.54 4.61 -1.12 0.11 8.39
tRNA 1TRA 30!A:40!A G:C WC [cWW][XIX] 10.9 53.52; 51.21 2.31 -10.51 0.13 20.62
tRNA 1TRA 31!A:39!A A:U Wb*_PSU [---][-] 10.87 62.9; 58.43 4.47 -12.35 0.43 18.9
tRNA 1TRA 33!A:35!A U:A S(sb:O2*-N7) [---][-] 6.65 91.01; 35.24 55.78 175.1 1.08 28.19
tRNA 1TRA 47!A:50!A U:U rpS(ps:O1P-O2*) [---][-] 8.99 62.38; 110.59 48.21 148.61 1.88 47.22
tRNA 1TRA 49!A:65!A C:G WC [cWW][XIX] 10.99 50.54; 55.58 5.04 -9.58 0.39 15.68
tRNA 1TRA 50!A:64!A U:A WC [cWW][XX] 10.55 55.57; 55.24 0.32 -10.24 0.32 9.74
tRNA 1TRA 51!A:63!A G:C WC [cWW][XIX] 10.22 51.53; 59.24 7.71 -12.56 0.03 16.67
tRNA 1TRA 52!A:62!A U:A WC [cWW][XX] 10.75 54.75; 53.01 1.74 -7.97 0.16 11.72
tRNA 1TRA 53!A:61!A G:C WC [cWW][XIX] 10.46 54.98; 53.9 1.08 -7.7 1.05 25.33
tRNA 1TRA 54!A:58!A U:A rH_1 [tWH][XXIV] 10.02 22.81; 21.35 1.46 174.27 0.0 5.02