Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1U63 BPC Identified: 43 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
mRNA 1U63 2!B:48!B G:C WC [cWW][XIX] 10.59 51.61; 52.96 1.35 -19.41 0.32 18.93
mRNA 1U63 3!B:47!B G:C WC [cWW][XIX] 10.96 50.87; 43.64 7.23 -22.28 0.57 23.43
mRNA 1U63 4!B:46!B A:U WC [cWW][XX] 10.56 54.94; 53.45 1.49 -4.04 0.28 6.54
mRNA 1U63 5!B:45!B G:C WC [cWW][XIX] 11.02 52.1; 51.57 0.53 -12.88 0.16 22.17
mRNA 1U63 6!B:44!B U:A WC [cWW][XX] 10.89 51.41; 49.48 1.93 -7.96 0.59 14.78
mRNA 1U63 7!B:43!B G:C WC [cWW][XIX] 10.62 52.74; 53.44 0.7 -19.73 0.32 26.78
mRNA 1U63 8!B:42!B A:U WC [cWW][XX] 10.55 54.07; 53.29 0.78 -9.84 1.24 3.63
mRNA 1U63 9!B:41!B A:U WC [cWW][XX] 10.58 55.66; 55.0 0.67 -9.99 0.14 14.97
mRNA 1U63 10!B:40!B G:C WC [cWW][XIX] 10.73 55.9; 54.87 1.02 -5.36 0.19 13.13
mRNA 1U63 11!B:39!B G:A S [tSH][XI] 9.51 97.24; 11.35 85.89 -10.28 0.12 10.9
mRNA 1U63 12!B:34!B A:G rS [tSS][-] 8.03 67.3; 82.13 14.83 129.89 2.16 45.94
mRNA 1U63 13!B:39!B G:A rS [tSS][-] 7.31 78.96; 61.92 17.04 -154.45 1.07 40.39
mRNA 1U63 13!B:33!B G:C WC [cWW][XIX] 10.74 51.6; 48.63 2.98 10.6 0.49 19.92
mRNA 1U63 14!B:32!B G:C WC [cWW][XIX] 10.68 54.37; 56.12 1.74 4.53 0.21 12.01
mRNA 1U63 15!B:31!B C:G WC [cWW][XIX] 10.65 55.79; 55.31 0.48 3.02 0.49 15.02
mRNA 1U63 16!B:30!B U:A WC [cWW][XX] 10.33 56.55; 57.91 1.36 2.36 0.0 11.12
mRNA 1U63 17!B:28!B C:G WC [cWW][XIX] 10.53 51.32; 54.43 3.11 -3.39 0.97 6.25
mRNA 1U63 18!B:27!B G:C WC [cWW][XIX] 10.67 56.02; 54.09 1.92 -7.19 0.38 13.99
mRNA 1U63 19!B:26!B C:G WC [cWW][XIX] 10.84 53.64; 53.49 0.15 -11.81 0.12 15.62
mRNA 1U63 20!B:25!B G:C WC [cWW][XIX] 10.78 54.99; 53.05 1.94 12.04 0.42 26.6
mRNA 1U63 33!B:39!B C:A rpS(bs:O2-O2*) [cSS][-] 5.57 87.27; 169.4 82.13 48.46 2.07 47.0
mRNA 1U63 2!D:48!D G:C WC [cWW][XIX] 10.15 57.0; 61.19 4.19 -5.66 0.51 11.32
mRNA 1U63 3!D:47!D G:C WC [cWW][XIX] 10.91 53.09; 52.15 0.95 0.45 0.18 8.12
mRNA 1U63 4!D:46!D A:U WC [cWW][XX] 11.16 48.82; 46.35 2.47 10.29 0.46 9.62
mRNA 1U63 5!D:45!D G:C WC [cWW][XIX] 10.75 54.55; 53.63 0.92 -10.97 0.59 23.34
mRNA 1U63 6!D:44!D U:A WC [cWW][XX] 11.03 50.94; 51.65 0.7 -14.75 0.17 25.57
mRNA 1U63 7!D:43!D G:C WC [cWW][XIX] 10.74 52.78; 55.96 3.18 23.26 0.01 9.94
mRNA 1U63 8!D:42!D A:U WC [cWW][XX] 10.47 57.22; 58.9 1.68 -5.43 0.23 7.38
mRNA 1U63 9!D:41!D A:U WC [cWW][XX] 10.34 55.95; 58.18 2.23 -2.55 0.0 5.36
mRNA 1U63 10!D:40!D G:C WC [cWW][XIX] 10.68 53.05; 55.21 2.15 -8.98 0.41 14.79
mRNA 1U63 11!D:39!D G:A S [tSH][XI] 9.67 91.49; 9.84 81.65 -14.66 0.43 9.04
mRNA 1U63 12!D:34!D A:G rS [tSS][-] 8.47 55.8; 77.56 21.76 142.51 2.49 64.54
mRNA 1U63 13!D:39!D G:A rS [tSS][-] 7.58 81.03; 60.34 20.69 -153.63 1.48 51.22
mRNA 1U63 13!D:33!D G:C WC [cWW][XIX] 10.68 54.2; 53.24 0.95 13.65 0.31 23.07
mRNA 1U63 14!D:32!D G:C WC [cWW][XIX] 10.67 56.87; 57.79 0.92 1.16 0.02 2.46
mRNA 1U63 15!D:31!D C:G WC [cWW][XIX] 10.56 56.44; 55.72 0.72 3.25 0.61 9.74
mRNA 1U63 16!D:30!D U:A WC [cWW][XX] 10.65 52.88; 56.87 3.99 5.83 0.24 13.4
mRNA 1U63 17!D:30!D C:A H_1 [---][-] 7.17 89.05; 64.17 24.88 -8.85 2.4 19.25
mRNA 1U63 17!D:28!D C:G WC [cWW][XIX] 10.54 56.68; 54.73 1.95 9.1 0.48 21.32
mRNA 1U63 18!D:27!D G:C WC [cWW][XIX] 10.51 58.24; 56.1 2.14 -2.32 0.15 12.46
mRNA 1U63 19!D:26!D C:G WC [cWW][XIX] 10.8 54.66; 53.72 0.94 -6.32 0.32 16.57
mRNA 1U63 20!D:25!D G:C WC [cWW][XIX] 10.3 57.45; 53.92 3.53 -11.51 1.28 40.37
mRNA 1U63 33!D:39!D C:A rpS(bs:O2-O2*) [cSS][-] 5.6 94.63; 167.46 72.83 -6.03 2.17 52.76