Identified Basepairs and Their Conformations and Conformational Parameters

PDB I!D:, 1U6B BPC Identified: 124 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 1U6B 1!B:6!C G:C WC [cWW][XIX] 10.91 48.73; 49.61 0.88 -7.96 0.55 7.31
Group_I_RNA 1U6B 5!B:5!C G:C WC [cWW][XIX] 10.68 50.45; 54.47 4.02 -8.01 0.25 9.29
Group_I_RNA 1U6B 6!B:4!C C:G WC [cWW][XIX] 11.01 47.07; 46.0 1.07 -6.89 0.08 6.33
Group_I_RNA 1U6B 7!B:3!C C:G WC [cWW][XIX] 10.73 50.97; 51.58 0.62 -6.58 0.06 10.59
Group_I_RNA 1U6B 8!B:2!C G:C WC [cWW][XIX] 10.63 48.54; 52.96 4.43 -10.19 0.43 15.72
Group_I_RNA 1U6B 9!B:1!C U:A WC [cWW][XX] 10.74 47.84; 52.48 4.64 -8.97 0.58 16.28
Group_I_RNA 1U6B 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 5.9 105.3; 154.86 49.56 -72.28 0.03 42.7
Group_I_RNA 1U6B 10!B:1!D G:U Wb [cWW][XXVIII] 10.61 36.58; 61.29 24.71 -16.94 0.44 7.87
Group_I_RNA 1U6B 10!B:87!B G:A rS [tSS][-] 8.02 73.88; 87.11 13.23 153.15 0.57 36.09
Group_I_RNA 1U6B 10!B:58!B G:A pfS(sb:O2*-N3) [---][-] 5.76 139.35; 92.38 46.96 -58.54 1.38 41.66
Group_I_RNA 1U6B 11!B:2!D U:A WC [cWW][XX] 10.65 51.49; 51.99 0.51 -14.0 0.07 16.88
Group_I_RNA 1U6B 12!B:3!D G:C WC [cWW][XIX] 10.63 51.99; 52.61 0.61 -7.55 0.05 9.36
Group_I_RNA 1U6B 12!B:168!B G:A rpS [cSS][-] 6.91 102.33; 133.52 31.19 -47.18 0.39 24.46
Group_I_RNA 1U6B 13!B:167!B C:A rpS(sb:O2*-N3) [cSS][-] 5.89 130.21; 94.96 35.25 -77.36 0.51 41.68
Group_I_RNA 1U6B 13!B:37!B C:G WC [cWW][XIX] 10.77 49.92; 45.8 4.12 -16.23 0.13 17.5
Group_I_RNA 1U6B 14!B:39!B C:A pfS [cSW][-] 9.63 130.71; 29.57 101.14 -19.48 0.67 35.28
Group_I_RNA 1U6B 14!B:36!B C:G WC [cWW][XIX] 10.85 52.2; 48.16 4.03 -12.11 0.08 12.47
Group_I_RNA 1U6B 15!B:35!B U:A WC [cWW][XX] 10.9 46.64; 51.86 5.22 -16.44 0.32 18.92
Group_I_RNA 1U6B 16!B:34!B U:A WC [cWW][XX] 10.66 55.28; 51.26 4.02 -8.34 0.55 5.79
Group_I_RNA 1U6B 17!B:33!B G:C WC [cWW][XIX] 10.95 48.13; 49.54 1.41 -10.12 0.41 19.0
Group_I_RNA 1U6B 18!B:32!B C:G WC [cWW][XIX] 10.57 55.58; 59.82 4.24 -11.84 0.57 30.65
Group_I_RNA 1U6B 19!B:31!B G:C WC [cWW][XIX] 10.42 58.57; 55.37 3.2 -15.67 0.46 26.99
Group_I_RNA 1U6B 22!B:29!B G:C WC [cWW][XIX] 11.28 50.77; 46.21 4.56 3.17 0.04 9.63
Group_I_RNA 1U6B 23!B:28!B G:C WC [cWW][XIX] 10.91 54.34; 56.45 2.11 3.74 0.05 4.19
Group_I_RNA 1U6B 24!B:27!B G:A S [tSH][XI] 9.4 95.51; 8.07 87.44 -101.66 0.26 12.06
Group_I_RNA 1U6B 24!B:26!B G:A S(sb:O2*-N7) [---][-] 7.93 85.31; 28.39 56.91 172.15 2.62 20.3
Group_I_RNA 1U6B 25!B:161!B A:A rWb* [tWW][I] 13.96 22.42; 28.83 6.41 135.53 0.23 18.02
Group_I_RNA 1U6B 26!B:148!B A:U rpS(sb:O2*-N3) [cSS][-] 5.55 101.27; 142.87 41.61 -55.72 0.61 33.95
Group_I_RNA 1U6B 27!B:163!B A:G rS [tSS][-] 7.9 65.24; 84.95 19.7 169.12 1.19 19.79
Group_I_RNA 1U6B 27!B:147!B A:C rpS(bs:O2-O2*) [cSS][-] 5.84 158.29; 97.0 61.29 -61.21 0.09 27.99
Group_I_RNA 1U6B 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 5.31 153.57; 158.74 5.17 -124.95 0.48 21.88
Group_I_RNA 1U6B 36!B:38!B G:G pS_1 [cSH][-] 9.17 117.11; 27.59 89.52 -26.08 0.75 46.39
Group_I_RNA 1U6B 41!B:143!B G:C WC [cWW][XIX] 10.59 58.63; 59.44 0.81 0.19 0.18 6.58
Group_I_RNA 1U6B 42!B:142!B G:C WC [cWW][XIX] 10.54 57.19; 59.87 2.68 -2.13 0.26 14.14
Group_I_RNA 1U6B 43!B:141!B U:A WC [cWW][XX] 10.56 53.04; 54.68 1.64 -1.37 0.14 6.93
Group_I_RNA 1U6B 44!B:140!B G:C WC [cWW][XIX] 10.47 56.46; 59.3 2.84 -8.73 0.3 19.36
Group_I_RNA 1U6B 45!B:139!B U:G Wb [cWW][XXVIII] 10.23 66.66; 48.47 18.19 -13.7 0.18 18.46
Group_I_RNA 1U6B 46!B:138!B C:G WC [cWW][XIX] 10.92 51.27; 53.51 2.24 -11.5 0.14 14.94
Group_I_RNA 1U6B 46!B:97!B C:A rpS(sb:O2*-N3) [cSS][-] 5.58 138.88; 94.51 44.38 -72.54 0.03 33.24
Group_I_RNA 1U6B 47!B:136!B A:A rH [tWH][V] 12.19 26.14; 21.46 4.68 -151.14 0.07 11.78
Group_I_RNA 1U6B 48!B:96!B A:C rpS(sb:O2*-N3) [cSS][-] 5.76 90.69; 152.14 61.45 -35.67 1.18 31.32
Group_I_RNA 1U6B 49!B:123!B A:G rS [tSS][-] 8.53 60.39; 86.87 26.48 159.55 0.54 18.21
Group_I_RNA 1U6B 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 5.71 149.33; 104.65 44.68 -44.1 1.26 7.85
Group_I_RNA 1U6B 51!B:93!B U:A WC [cWW][XX] 10.06 58.22; 59.6 1.38 3.06 0.55 13.82
Group_I_RNA 1U6B 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 8.99 17.36; 147.15 129.79 20.64 0.59 7.38
Group_I_RNA 1U6B 52!B:92!B C:G WC [cWW][XIX] 10.5 54.73; 57.38 2.64 -2.13 0.09 3.87
Group_I_RNA 1U6B 53!B:91!B G:C WC [cWW][XIX] 10.68 50.98; 56.42 5.44 4.45 0.18 2.56
Group_I_RNA 1U6B 54!B:90!B G:C WC [cWW][XIX] 10.44 52.15; 58.18 6.04 9.46 0.59 7.72
Group_I_RNA 1U6B 55!B:89!B C:G WC [cWW][XIX] 10.65 52.94; 51.78 1.16 5.56 0.11 4.0
Group_I_RNA 1U6B 56!B:88!B G:C WC [cWW][XIX] 10.39 54.78; 55.15 0.37 -4.85 0.04 29.43
Group_I_RNA 1U6B 57!B:87!B A:A S [tSH][-] 9.52 86.34; 3.33 83.01 -55.81 0.41 12.32
Group_I_RNA 1U6B 58!B:86!B A:A S [tSH][-] 9.31 4.59; 87.47 82.88 86.13 0.26 5.16
Group_I_RNA 1U6B 59!B:85!B A:C Wb [cWW][-] 11.19 27.19; 59.18 31.99 0.19 0.91 25.69
Group_I_RNA 1U6B 60!B:84!B C:G WC [cWW][XIX] 10.9 48.08; 52.88 4.8 -9.64 0.65 29.55
Group_I_RNA 1U6B 61!B:192!C C:A rpS(bs:O2-O2*) [cSS][-] 5.95 97.34; 159.44 62.1 -66.85 0.1 29.34
Group_I_RNA 1U6B 61!B:83!B C:G WC [cWW][XIX] 10.79 52.88; 50.66 2.21 -2.44 0.38 13.56
Group_I_RNA 1U6B 62!B:191!C U:A rpS(sb:O2*-N3) [cSS][-] 5.82 149.74; 92.65 57.09 -70.86 0.51 30.94
Group_I_RNA 1U6B 62!B:81!B U:A rH_1 [tWH][XXIV] 9.34 36.89; 15.8 21.1 162.18 0.01 18.42
Group_I_RNA 1U6B 63!B:64!B A:A pS [cSH][-] 6.79 140.52; 33.95 106.57 18.46 0.11 11.79
Group_I_RNA 1U6B 65!B:80!B G:U Wb [cWW][XXVIII] 10.74 40.58; 60.52 19.94 -9.65 0.21 11.41
Group_I_RNA 1U6B 66!B:79!B C:G WC [cWW][XIX] 10.5 51.94; 51.72 0.23 -12.1 0.17 19.0
Group_I_RNA 1U6B 67!B:78!B G:C WC [cWW][XIX] 10.72 54.41; 52.61 1.8 -8.2 0.16 14.7
Group_I_RNA 1U6B 68!B:77!B C:G WC [cWW][XIX] 10.74 53.35; 51.58 1.78 -5.77 0.18 13.49
Group_I_RNA 1U6B 69!B:76!B C:G WC [cWW][XIX] 10.56 57.85; 46.54 11.31 -4.07 0.04 7.88
Group_I_RNA 1U6B 70!B:75!B C:G WC [cWW][XIX] 10.63 57.41; 50.2 7.21 1.54 0.16 3.3
Group_I_RNA 1U6B 81!B:190!B A:A rWb* [tWW][I] 14.09 31.92; 33.4 1.48 117.5 0.63 34.87
Group_I_RNA 1U6B 83!B:192!C G:A rS [tSS][-] 7.86 82.82; 67.22 15.61 170.82 0.4 31.15
Group_I_RNA 1U6B 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 5.85 157.81; 146.72 11.09 -124.22 0.89 34.59
Group_I_RNA 1U6B 87!B:1!D A:U rpS(bs:O2-O2*) [---][-] 6.48 148.11; 106.44 41.66 -113.08 0.34 37.83
Group_I_RNA 1U6B 90!B:171!B C:C rpS* [---][-] 11.59 39.15; 24.3 14.85 46.38 2.32 15.11
Group_I_RNA 1U6B 91!B:126!B C:U rS* [tHH][-] 12.57 15.26; 16.46 1.2 -89.72 0.74 22.9
Group_I_RNA 1U6B 92!B:125!B G:G S_1 [tSH][-] 11.44 9.61; 86.79 77.18 20.67 1.03 10.36
Group_I_RNA 1U6B 93!B:125!B A:G S [tSH][XI] 10.71 20.42; 103.89 83.47 -12.46 1.21 9.5
Group_I_RNA 1U6B 94!B:124!B G:U Wb [cWW][XXVIII] 10.5 40.34; 67.14 26.8 -13.4 0.39 17.32
Group_I_RNA 1U6B 95!B:123!B C:G WC [cWW][XIX] 10.69 52.67; 54.76 2.09 -11.97 0.35 18.95
Group_I_RNA 1U6B 96!B:122!B C:G WC [cWW][XIX] 10.79 50.42; 55.05 4.63 -3.32 0.2 4.51
Group_I_RNA 1U6B 98!B:139!B A:G rS [tSS][-] 8.0 54.96; 94.67 39.71 178.06 0.43 27.0
Group_I_RNA 1U6B 98!B:121!B A:A Wb [cWW][-] 13.7 23.75; 50.62 26.87 -2.25 0.57 28.88
Group_I_RNA 1U6B 99!B:120!B G:A WC [cWW][VIII] 12.57 46.99; 46.35 0.64 -4.39 1.29 33.64
Group_I_RNA 1U6B 100!B:119!B C:G WC [cWW][XIX] 11.04 43.22; 54.26 11.05 -8.74 1.18 32.22
Group_I_RNA 1U6B 101!B:118!B U:U Wb [cWW][XVI] 9.54 39.23; 60.53 21.3 -11.47 0.28 17.2
Group_I_RNA 1U6B 102!B:117!B U:A WC [cWW][XX] 10.89 48.54; 56.94 8.4 -1.7 0.26 9.32
Group_I_RNA 1U6B 103!B:116!B C:G WC [cWW][XIX] 10.95 49.56; 55.92 6.36 -10.51 0.48 8.07
Group_I_RNA 1U6B 104!B:115!B G:C WC [cWW][XIX] 11.17 48.75; 47.58 1.17 -2.68 0.33 3.36
Group_I_RNA 1U6B 105!B:114!B C:G WC [cWW][XIX] 10.27 60.84; 60.54 0.3 5.51 0.23 16.48
Group_I_RNA 1U6B 106!B:113!B A:U WC [cWW][XX] 10.78 56.66; 53.51 3.14 -6.57 0.68 37.44
Group_I_RNA 1U6B 107!B:112!B G:C WC [cWW][XIX] 11.07 53.6; 48.55 5.06 5.08 0.4 24.25
Group_I_RNA 1U6B 1001!B:1014!B C:G WC [cWW][XIX] 11.02 50.72; 50.72 0.0 -1.17 0.4 6.59
Group_I_RNA 1U6B 1002!B:1013!B C:G WC [cWW][XIX] 10.84 51.75; 51.67 0.08 -3.28 0.03 6.97
Group_I_RNA 1U6B 128!B:178!B G:C WC [cWW][XIX] 10.72 50.46; 52.24 1.77 -14.18 0.09 18.01
Group_I_RNA 1U6B 128!B:129!B G:A pS_2 [cSH][-] 7.49 110.11; 68.77 41.34 -6.99 0.26 21.86
Group_I_RNA 1U6B 129!B:178!B A:C S [tSH][-] 9.72 9.72; 94.85 85.14 -39.82 0.63 22.41
Group_I_RNA 1U6B 130!B:206!C G:G H_1 [cWH][VI] 11.5 29.94; 59.93 29.99 -0.97 0.41 18.8
Group_I_RNA 1U6B 130!B:177!B G:C WC [cWW][XIX] 10.54 52.79; 59.66 6.87 -5.7 0.18 11.22
Group_I_RNA 1U6B 131!B:176!B A:U WC [cWW][XX] 10.38 59.54; 56.83 2.7 0.99 0.14 5.18
Group_I_RNA 1U6B 132!B:175!B C:G WC [cWW][XIX] 10.53 56.67; 53.63 3.04 -3.0 0.1 9.58
Group_I_RNA 1U6B 132!B:172!B C:A rH* [---][-] 12.52 8.86; 51.82 42.96 105.11 1.89 13.1
Group_I_RNA 1U6B 133!B:174!B U:A WC [cWW][XX] 10.87 53.02; 47.05 5.97 -18.21 0.22 24.54
Group_I_RNA 1U6B 134!B:173!B A:U WC [cWW][XX] 10.97 51.44; 51.38 0.05 -7.63 0.02 10.96
Group_I_RNA 1U6B 135!B:170!B G:G rH_1 [tWH][VII] 10.74 48.28; 28.96 19.32 166.82 0.02 15.13
Group_I_RNA 1U6B 144!B:166!B C:G WC [cWW][XIX] 10.85 52.75; 53.59 0.84 -2.76 0.02 4.88
Group_I_RNA 1U6B 145!B:165!B A:U WC [cWW][XX] 10.42 57.55; 56.52 1.03 -4.6 0.41 11.71
Group_I_RNA 1U6B 146!B:164!B C:G WC [cWW][XIX] 10.52 54.06; 53.63 0.42 -9.75 0.18 16.69
Group_I_RNA 1U6B 147!B:163!B C:G WC [cWW][XIX] 10.72 51.78; 52.98 1.2 -5.47 0.04 9.38
Group_I_RNA 1U6B 148!B:161!B U:A rH_1 [tWH][XXIV] 9.66 33.3; 17.98 15.33 134.29 0.13 17.77
Group_I_RNA 1U6B 149!B:150!B A:A pS [cSH][-] 6.57 137.72; 40.61 97.12 8.88 0.56 14.31
Group_I_RNA 1U6B 150!B:162!B A:U WC [cWW][XX] 10.94 45.24; 50.82 5.58 20.0 0.51 31.16
Group_I_RNA 1U6B 151!B:160!B G:U Wb [cWW][XXVIII] 10.9 33.35; 58.5 25.15 -8.09 0.07 9.46
Group_I_RNA 1U6B 152!B:159!B G:C WC [cWW][XIX] 10.59 54.69; 51.01 3.68 -11.06 0.23 15.4
Group_I_RNA 1U6B 153!B:158!B C:G WC [cWW][XIX] 10.76 50.63; 54.74 4.11 -5.37 0.15 11.76
Group_I_RNA 1U6B 154!B:156!B A:A S(sb:O2*-N7)_2 [---][-] 6.93 91.43; 46.93 44.5 177.48 2.55 22.83
Group_I_RNA 1U6B 168!B:3!D A:C fS(sb:O2*-N1)_1 [tSS][-] 8.67 53.61; 91.31 37.7 172.06 0.41 17.09
Group_I_RNA 1U6B 179!B:205!C A:A H_2 [---][-] 11.56 25.21; 41.59 16.38 4.75 0.39 13.46
Group_I_RNA 1U6B 180!B:204!C G:C WC [cWW][XIX] 10.68 54.44; 53.55 0.89 -8.73 0.21 6.02
Group_I_RNA 1U6B 181!B:203!C G:C WC [cWW][XIX] 10.59 54.01; 52.29 1.72 -8.03 0.21 12.93
Group_I_RNA 1U6B 182!B:202!C G:A S [tSH][XI] 9.47 96.51; 4.38 92.13 168.88 0.71 15.1
Group_I_RNA 1U6B 183!B:201!C A:A rS* [tHH][-] 9.89 21.86; 17.61 4.25 -123.06 0.15 15.34
Group_I_RNA 1U6B 184!B:197!C G:C WC [cWW][XIX] 10.79 54.94; 47.7 7.24 7.25 0.0 27.0
Group_I_RNA 1U6B 185!B:196!C U:A WC [cWW][XX] 10.67 51.03; 52.58 1.55 2.77 0.86 9.47
Group_I_RNA 1U6B 186!B:195!C G:C WC [cWW][XIX] 11.01 57.39; 54.56 2.83 -6.96 0.32 17.56
Group_I_RNA 1U6B 187!B:194!C G:C WC [cWW][XIX] 10.81 52.31; 55.58 3.28 -6.27 0.13 18.94
Group_I_RNA 1U6B 188!B:193!C C:G WC [cWW][XIX] 11.03 54.72; 47.43 7.29 -2.87 0.01 2.78
Group_I_RNA 1U6B 189!B:192!C G:A S [tSH][XI] 9.31 92.37; 13.74 78.63 -99.24 0.62 18.8
Group_I_RNA 1U6B 206!C:1!C G:A rS(sp:O2*-O2P) [---][-] 9.73 155.5; 118.79 36.71 -11.65 1.51 12.78