Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1U8D BPC Identified: 36 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 1U8D 15!A:81!A G:C WC [cWW][XIX] 10.71 50.39; 53.8 3.41 -14.81 0.38 13.14
Riboswitch 1U8D 16!A:80!A G:C WC [cWW][XIX] 10.71 54.49; 51.08 3.4 -9.39 0.07 11.47
Riboswitch 1U8D 17!A:79!A A:U WC [cWW][XX] 10.39 57.16; 56.82 0.33 -8.85 0.0 9.21
Riboswitch 1U8D 18!A:78!A C:G WC [cWW][XIX] 10.68 51.96; 55.42 3.46 -11.99 0.07 15.77
Riboswitch 1U8D 19!A:77!A A:U WC [cWW][XX] 10.29 59.74; 60.25 0.51 -8.24 0.19 11.51
Riboswitch 1U8D 20!A:76!A U:A WC [cWW][XX] 10.24 60.15; 57.32 2.83 -12.93 0.34 20.9
Riboswitch 1U8D 21!A:75!A A:U WC [cWW][XX] 10.41 59.67; 56.72 2.94 -7.79 0.12 15.44
Riboswitch 1U8D 22!A:52!A U:A WC [cWW][XX] 10.4 57.19; 55.0 2.19 2.62 0.57 17.02
Riboswitch 1U8D 23!A:46!A A:G fS [tSW][X] 9.48 3.31; 119.55 116.23 108.45 0.42 2.34
Riboswitch 1U8D 24!A:53!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.52 147.09; 139.01 8.08 -125.54 1.92 36.02
Riboswitch 1U8D 25!A:45!A U:A WC [cWW][XX] 10.34 56.42; 59.01 2.58 -11.0 0.1 11.87
Riboswitch 1U8D 26!A:44!A C:A sWb [---][-] 10.25 84.9; 45.43 39.46 -2.09 0.07 11.7
Riboswitch 1U8D 27!A:43!A G:C WC [cWW][XIX] 11.02 48.82; 52.23 3.41 0.17 0.07 9.2
Riboswitch 1U8D 28!A:42!A C:G WC [cWW][XIX] 10.69 54.51; 55.29 0.79 -5.5 0.5 17.14
Riboswitch 1U8D 29!A:41!A G:C WC [cWW][XIX] 10.53 54.36; 56.83 2.47 -9.88 0.03 14.52
Riboswitch 1U8D 30!A:40!A U:A WC [cWW][XX] 10.45 56.66; 57.83 1.17 -3.67 0.2 8.87
Riboswitch 1U8D 31!A:39!A G:C WC [cWW][XIX] 10.49 55.69; 57.2 1.51 -2.46 0.26 9.35
Riboswitch 1U8D 33!A:66!A A:A rH [tWH][V] 12.33 22.83; 20.75 2.08 134.62 0.2 11.03
Riboswitch 1U8D 33!A:37!A A:G rpS(sb:O2*-N3) [---][-] 5.4 103.42; 155.96 52.54 -10.97 1.62 13.6
Riboswitch 1U8D 34!A:65!A U:A rH_1 [tWH][XXIV] 9.51 30.92; 19.95 10.97 176.91 0.12 4.12
Riboswitch 1U8D 34!A:37!A U:G rpS [cSS][-] 4.44 122.72; 100.81 21.91 123.09 1.58 24.26
Riboswitch 1U8D 35!A:64!A A:A rH [tWH][V] 12.22 21.16; 20.59 0.57 168.5 0.16 6.54
Riboswitch 1U8D 37!A:61!A G:C WC [cWW][XIX] 10.85 50.51; 52.62 2.11 -14.26 0.49 10.33
Riboswitch 1U8D 38!A:66!A G:A fS [tSW][X] 9.28 117.74; 25.29 92.45 -83.96 0.3 32.64
Riboswitch 1U8D 38!A:60!A G:C WC [cWW][XIX] 10.7 54.08; 54.4 0.33 -5.12 0.71 20.81
Riboswitch 1U8D 46!A:53!A G:C WC [cWW][XIX] 10.62 54.18; 55.78 1.6 1.52 0.83 24.8
Riboswitch 1U8D 49!A:76!A U:A pfS* [cWS][-] 6.19 67.25; 125.17 57.92 29.13 1.22 32.61
Riboswitch 1U8D 50!A:75!A C:U pfS [cSW][-] 7.79 38.38; 132.03 93.65 -33.45 0.61 23.84
Riboswitch 1U8D 54!A:72!A C:G WC [cWW][XIX] 10.54 57.42; 56.11 1.32 -8.75 0.16 16.16
Riboswitch 1U8D 55!A:71!A G:C WC [cWW][XIX] 10.78 52.89; 53.14 0.25 -15.03 0.15 10.07
Riboswitch 1U8D 56!A:70!A G:C WC [cWW][XIX] 10.64 52.38; 55.1 2.72 -13.62 0.09 14.92
Riboswitch 1U8D 57!A:69!A G:U Wb [cWW][XXVIII] 10.35 42.13; 67.97 25.84 -17.81 0.2 17.19
Riboswitch 1U8D 58!A:68!A C:G WC [cWW][XIX] 10.53 56.17; 56.07 0.09 -14.13 0.12 19.95
Riboswitch 1U8D 59!A:67!A A:U WC [cWW][XX] 10.68 55.87; 52.79 3.08 -11.79 0.27 10.08
Riboswitch 1U8D 61!A:65!A C:A pfS [cSW][-] 9.18 129.11; 40.81 88.3 17.07 0.68 18.31
Riboswitch 1U8D 62!A:63!A G:U pS* [cHS][-] 6.61 143.35; 53.21 90.13 14.8 0.03 10.39