Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1U9S BPC Identified: 93 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNase_P_RNA 1U9S 76!A:234!A G:C WC [cWW][XIX] 10.73 53.67; 55.62 1.95 2.09 0.29 7.75
RNase_P_RNA 1U9S 77!A:233!A G:C WC [cWW][XIX] 10.46 56.76; 57.14 0.37 0.56 0.32 5.4
RNase_P_RNA 1U9S 78!A:232!A U:A WC [cWW][XX] 10.57 54.39; 58.17 3.78 -1.12 0.26 5.68
RNase_P_RNA 1U9S 79!A:231!A G:C WC [cWW][XIX] 10.58 55.57; 57.3 1.72 -16.49 0.49 22.64
RNase_P_RNA 1U9S 80!A:208!A C:A rpS(bs:O2-O2*) [cSS][-] 6.06 101.12; 154.53 53.41 -48.58 0.93 15.91
RNase_P_RNA 1U9S 80!A:94!A C:G WC [cWW][XIX] 10.77 52.95; 54.31 1.36 0.71 0.21 4.71
RNase_P_RNA 1U9S 81!A:207!A C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.4 143.57; 104.72 38.85 -52.79 0.67 29.95
RNase_P_RNA 1U9S 81!A:93!A C:G WC [cWW][XIX] 10.87 50.45; 57.12 6.67 -10.65 0.12 9.91
RNase_P_RNA 1U9S 82!A:92!A A:U WC [cWW][XX] 10.83 55.17; 53.71 1.46 -7.54 0.26 6.6
RNase_P_RNA 1U9S 83!A:91!A G:C WC [cWW][XIX] 10.94 52.87; 51.34 1.53 -13.52 0.62 9.49
RNase_P_RNA 1U9S 84!A:90!A G:C WC [cWW][XIX] 10.73 54.75; 54.25 0.5 -10.81 0.63 5.39
RNase_P_RNA 1U9S 85!A:87!A U:A S(sb:O2*-N7) [---][-] 6.64 93.56; 45.44 48.11 -156.92 0.59 48.52
RNase_P_RNA 1U9S 94!A:208!A G:A rS [tSS][-] 8.12 88.09; 64.73 23.35 165.4 0.34 11.3
RNase_P_RNA 1U9S 95!A:209!A G:C rS(ss:O2*-O2*) [---][-] 5.72 164.22; 159.25 4.98 -128.3 0.45 21.8
RNase_P_RNA 1U9S 95!A:109!A G:C WC [cWW][XIX] 10.61 52.62; 53.63 1.02 -23.88 0.22 22.12
RNase_P_RNA 1U9S 96!A:107!A C:G WC [cWW][XIX] 10.73 53.54; 51.28 2.26 -18.84 0.26 17.47
RNase_P_RNA 1U9S 97!A:106!A G:C WC [cWW][XIX] 10.77 52.77; 53.25 0.48 -5.31 0.0 11.07
RNase_P_RNA 1U9S 98!A:105!A G:C WC [cWW][XIX] 10.61 56.59; 55.69 0.9 -0.62 0.11 2.65
RNase_P_RNA 1U9S 99!A:104!A G:C WC [cWW][XIX] 10.45 55.28; 58.38 3.11 3.67 0.11 4.63
RNase_P_RNA 1U9S 100!A:103!A G:A S [tSH][XI] 9.73 96.11; 13.77 82.34 -108.74 1.05 12.01
RNase_P_RNA 1U9S 100!A:102!A G:A S(sb:O2*-N7) [---][-] 7.46 91.54; 31.8 59.74 -169.18 1.85 30.13
RNase_P_RNA 1U9S 110!A:230!A G:C WC [cWW][XIX] 10.88 52.03; 53.28 1.25 -2.8 0.15 13.07
RNase_P_RNA 1U9S 111!A:229!A G:C WC [cWW][XIX] 10.66 54.38; 54.41 0.02 -7.79 0.86 20.57
RNase_P_RNA 1U9S 112!A:227!A A:A rH [tWH][V] 11.78 40.24; 18.67 21.57 101.7 0.7 32.7
RNase_P_RNA 1U9S 115!A:228!A G:C WC [cWW][XIX] 10.61 55.81; 58.53 2.72 -3.7 0.29 6.71
RNase_P_RNA 1U9S 116!A:227!A U:A WC [cWW][XX] 10.39 56.95; 58.03 1.08 4.17 0.32 8.81
RNase_P_RNA 1U9S 117!A:224!A G:C WC [cWW][XIX] 10.78 54.31; 53.52 0.79 -4.26 0.15 6.54
RNase_P_RNA 1U9S 118!A:223!A C:G WC [cWW][XIX] 10.75 53.47; 55.41 1.93 -8.4 0.14 10.32
RNase_P_RNA 1U9S 119!A:222!A C:G WC [cWW][XIX] 10.71 55.99; 53.75 2.24 -3.14 0.01 10.57
RNase_P_RNA 1U9S 119!A:172!A C:A fS(sb:O2*-N6) [---][-] 10.32 133.78; 23.38 110.4 116.34 1.23 37.97
RNase_P_RNA 1U9S 120!A:172!A A:A rS* [tHH][-] 10.86 17.99; 25.44 7.44 -92.7 1.43 32.05
RNase_P_RNA 1U9S 122!A:170!A A:U rpS(sb:O2*-N3) [cSS][-] 5.26 101.67; 138.44 36.77 -25.56 0.1 22.18
RNase_P_RNA 1U9S 122!A:126!A A:A rH [tWH][V] 12.34 21.8; 23.66 1.86 -169.75 0.31 14.57
RNase_P_RNA 1U9S 123!A:174!A G:A fS [tSW][X] 10.03 115.23; 15.86 99.37 -110.06 0.6 20.29
RNase_P_RNA 1U9S 123!A:169!A G:G rpS(sb:O2*-N2)_3 [---][-] 9.15 158.07; 75.42 82.65 174.69 0.44 22.41
RNase_P_RNA 1U9S 123!A:125!A G:G S(sb:O2*-N7)_1 [---][-] 7.3 93.78; 29.59 64.19 -153.9 0.1 31.56
RNase_P_RNA 1U9S 124!A:169!A A:G H_1 [cWH][IX] 11.08 37.63; 60.7 23.06 15.17 1.59 40.26
RNase_P_RNA 1U9S 124!A:130!A A:G pfS(sb:O2*-N3) [---][-] 5.89 86.07; 150.11 64.04 -67.01 1.88 15.91
RNase_P_RNA 1U9S 125!A:129!A G:A pfS(sb:O2*-N3) [---][-] 5.27 147.02; 92.07 54.95 -62.46 1.52 13.09
RNase_P_RNA 1U9S 126!A:171!A A:G fS [tSW][X] 9.89 5.84; 115.35 109.51 -124.03 0.87 25.29
RNase_P_RNA 1U9S 131!A:132!A A:C pS* [cHS][-] 7.05 142.54; 43.67 98.87 13.35 0.29 19.57
RNase_P_RNA 1U9S 132!A:168!A C:G WC [cWW][XIX] 10.32 56.89; 56.76 0.14 -8.65 0.54 32.18
RNase_P_RNA 1U9S 133!A:167!A C:G WC [cWW][XIX] 10.69 57.54; 50.89 6.65 1.63 0.18 12.19
RNase_P_RNA 1U9S 134!A:164!A G:C WC [cWW][XIX] 10.6 54.94; 54.47 0.47 3.61 0.47 15.27
RNase_P_RNA 1U9S 135!A:185!A C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.37 100.82; 149.03 48.21 -46.57 0.23 34.99
RNase_P_RNA 1U9S 135!A:163!A C:G WC [cWW][XIX] 10.71 53.96; 53.9 0.05 -8.31 0.19 13.64
RNase_P_RNA 1U9S 136!A:184!A C:A rpS(sb:O2*-N3) [cSS][-] 5.95 136.87; 90.25 46.62 -62.18 1.41 45.78
RNase_P_RNA 1U9S 136!A:162!A C:G WC [cWW][XIX] 10.7 52.62; 56.67 4.05 -7.17 0.11 9.93
RNase_P_RNA 1U9S 138!A:162!A G:G S_1 [tSH][-] 11.57 31.84; 102.7 70.86 6.07 0.63 33.46
RNase_P_RNA 1U9S 139!A:161!A C:G WC [cWW][XIX] 10.65 54.91; 54.33 0.59 -11.86 0.07 13.6
RNase_P_RNA 1U9S 140!A:160!A G:C WC [cWW][XIX] 10.68 55.23; 53.71 1.51 0.36 0.15 3.95
RNase_P_RNA 1U9S 141!A:158!A G:U WC [---][-] 10.75 48.64; 54.68 6.04 -9.25 0.02 7.31
RNase_P_RNA 1U9S 142!A:157!A C:G WC [cWW][XIX] 10.91 51.2; 52.39 1.19 -1.39 0.3 8.05
RNase_P_RNA 1U9S 143!A:156!A C:G WC [cWW][XIX] 10.73 55.05; 55.28 0.23 3.46 0.12 5.9
RNase_P_RNA 1U9S 144!A:155!A G:C WC [cWW][XIX] 10.69 52.17; 54.57 2.4 -2.56 0.31 2.63
RNase_P_RNA 1U9S 145!A:154!A G:C WC [cWW][XIX] 10.95 50.49; 52.05 1.56 -5.22 0.06 12.74
RNase_P_RNA 1U9S 146!A:153!A G:C WC [cWW][XIX] 10.54 57.31; 53.69 3.62 -6.25 0.24 17.7
RNase_P_RNA 1U9S 146!A:152!A G:C WC_mo [cWW][XIX] 13.06 41.75; 35.57 6.18 21.42 2.16 14.42
RNase_P_RNA 1U9S 147!A:152!A G:C WC [cWW][XIX] 10.9 52.68; 51.6 1.08 3.1 0.13 5.11
RNase_P_RNA 1U9S 159!A:161!A G:G pS_1 [cSH][-] 9.76 123.2; 31.32 91.88 -7.09 0.08 14.3
RNase_P_RNA 1U9S 163!A:185!A G:A rS [tSS][-] 8.07 89.78; 59.2 30.58 169.67 1.37 23.73
RNase_P_RNA 1U9S 163!A:184!A G:A fS(sb:O2*-N6) [---][-] 8.83 109.24; 33.08 76.16 175.11 0.08 35.73
RNase_P_RNA 1U9S 164!A:186!A C:G rS(ss:O2*-O2*) [---][-] 5.16 163.84; 112.34 51.51 -132.16 0.56 68.61
RNase_P_RNA 1U9S 170!A:174!A U:A rH_1 [tWH][XXIV] 10.3 28.75; 13.02 15.73 -167.61 0.36 23.25
RNase_P_RNA 1U9S 171!A:173!A G:A S(sb:O2*-N7) [---][-] 7.52 79.56; 26.62 52.94 -172.44 1.52 24.5
RNase_P_RNA 1U9S 176!A:218!A G:G H_1 [cWH][VI] 11.51 27.5; 76.19 48.69 -16.22 0.16 13.93
RNase_P_RNA 1U9S 176!A:194!A G:C WC [cWW][XIX] 10.56 54.84; 56.16 1.33 -0.67 0.17 4.67
RNase_P_RNA 1U9S 177!A:193!A G:C WC [cWW][XIX] 10.52 54.07; 56.53 2.46 -4.96 0.24 12.09
RNase_P_RNA 1U9S 177!A:188!A G:G H_1 [cWH][VI] 12.09 24.57; 55.31 30.74 4.0 0.48 6.69
RNase_P_RNA 1U9S 178!A:192!A C:A Wb [cWW][-] 10.34 68.98; 45.35 23.63 -13.89 0.52 16.16
RNase_P_RNA 1U9S 179!A:191!A G:C WC [cWW][XIX] 10.55 55.36; 57.35 1.99 -10.27 0.21 14.35
RNase_P_RNA 1U9S 180!A:190!A G:C WC [cWW][XIX] 10.69 52.93; 51.0 1.92 -10.82 0.17 12.16
RNase_P_RNA 1U9S 181!A:189!A G:C WC [cWW][XIX] 10.37 54.52; 53.53 0.98 -16.81 0.64 41.41
RNase_P_RNA 1U9S 182!A:187!A G:A S [tSH][XI] 10.65 76.09; 23.58 52.51 156.57 0.23 12.39
RNase_P_RNA 1U9S 183!A:186!A U:G S(bp:N3-O2P)_1 [---][-] 6.8 86.6; 36.67 49.94 -152.04 2.13 46.91
RNase_P_RNA 1U9S 183!A:185!A U:A S(sb:O2*-N7) [---][-] 6.84 78.79; 35.56 43.23 -167.78 0.99 28.18
RNase_P_RNA 1U9S 188!A:192!A G:A rH_2 [---][-] 13.06 17.39; 22.28 4.89 -63.86 0.38 17.03
RNase_P_RNA 1U9S 195!A:219!A G:C WC [cWW][XIX] 10.73 50.55; 50.97 0.42 -10.73 0.25 10.21
RNase_P_RNA 1U9S 196!A:221!A C:C pfS [cSW][-] 7.48 142.4; 37.5 104.9 -35.01 0.52 52.17
RNase_P_RNA 1U9S 196!A:217!A C:G WC [cWW][XIX] 10.76 54.61; 54.08 0.53 -10.67 0.29 7.29
RNase_P_RNA 1U9S 197!A:216!A C:G WC [cWW][XIX] 10.38 56.09; 56.47 0.38 -16.76 0.15 19.92
RNase_P_RNA 1U9S 198!A:215!A U:G Wb [cWW][XXVIII] 10.28 66.28; 46.64 19.64 -6.57 0.16 10.57
RNase_P_RNA 1U9S 199!A:214!A G:C WC [cWW][XIX] 10.64 52.79; 54.58 1.79 -5.55 0.32 13.9
RNase_P_RNA 1U9S 200!A:213!A G:C WC [cWW][XIX] 10.7 54.89; 53.5 1.39 -1.73 0.2 10.21
RNase_P_RNA 1U9S 201!A:212!A C:G WC [cWW][XIX] 10.78 54.83; 54.95 0.12 4.35 0.05 4.13
RNase_P_RNA 1U9S 202!A:211!A C:G WC [cWW][XIX] 10.78 53.78; 55.25 1.47 1.77 0.16 5.65
RNase_P_RNA 1U9S 203!A:210!A U:A WC [cWW][XX] 10.78 52.75; 55.19 2.44 -4.91 0.26 4.74
RNase_P_RNA 1U9S 204!A:209!A G:C WC [cWW][XIX] 10.68 50.47; 54.93 4.46 -5.05 0.2 13.83
RNase_P_RNA 1U9S 205!A:208!A G:A S [tSH][XI] 9.69 97.78; 14.26 83.52 -107.7 0.47 12.43
RNase_P_RNA 1U9S 205!A:207!A G:A S(sb:O2*-N7) [---][-] 7.27 93.94; 30.51 63.42 -178.54 2.7 27.27
RNase_P_RNA 1U9S 217!A:220!A G:A S_Mo [tSH][XI] 9.65 115.18; 36.54 78.64 -20.9 0.05 17.1
RNase_P_RNA 1U9S 219!A:221!A C:C pS [cSH][-] 8.6 123.05; 20.07 102.98 4.06 0.32 45.65
RNase_P_RNA 1U9S 225!A:228!A A:C pS* [cHS][-] 7.16 138.81; 32.44 106.37 -30.31 0.6 20.37