Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1UN6
BPC Identified: 60
Ambiguities: 0
rRNA |
1UN6 |
4!E:115!E |
G:C |
WC [cWW][XIX] |
11.1 |
56.12; 42.77 |
13.35 |
-4.43 |
0.01 |
24.52 |
rRNA |
1UN6 |
5!E:114!E |
C:G |
WC [cWW][XIX] |
10.31 |
57.44; 59.58 |
2.14 |
-9.08 |
0.01 |
22.32 |
rRNA |
1UN6 |
6!E:113!E |
C:G |
WC [cWW][XIX] |
10.35 |
62.57; 58.56 |
4.01 |
-2.82 |
0.66 |
15.26 |
rRNA |
1UN6 |
7!E:112!E |
G:C |
WC [cWW][XIX] |
10.43 |
65.11; 54.3 |
10.81 |
-8.99 |
0.18 |
20.12 |
rRNA |
1UN6 |
8!E:111!E |
G:C |
WC [cWW][XIX] |
10.72 |
57.12; 52.15 |
4.97 |
-1.3 |
0.89 |
6.44 |
rRNA |
1UN6 |
9!E:110!E |
C:G |
WC_Mo [cWW][XIX] |
10.59 |
65.28; 62.12 |
3.17 |
-7.09 |
0.07 |
20.95 |
rRNA |
1UN6 |
11!E:66!E |
A:G |
fS(sb:O2*-N1)_1 [---][-] |
8.81 |
58.29; 97.57 |
39.28 |
144.08 |
1.75 |
50.05 |
rRNA |
1UN6 |
14!E:65!E |
C:G |
WC [cWW][XIX] |
10.52 |
57.93; 52.56 |
5.37 |
5.42 |
0.46 |
13.83 |
rRNA |
1UN6 |
15!E:64!E |
C:G |
WC [cWW][XIX] |
10.57 |
56.67; 55.3 |
1.38 |
11.42 |
0.37 |
11.89 |
rRNA |
1UN6 |
16!E:19!E |
U:G |
fS_1 [tSW][-] |
9.94 |
102.56; 29.11 |
73.44 |
160.68 |
0.29 |
15.63 |
rRNA |
1UN6 |
66!E:109!E |
G:U |
Wb [cWW][XXVIII] |
11.11 |
40.23; 49.45 |
9.22 |
-19.67 |
0.64 |
34.11 |
rRNA |
1UN6 |
67!E:108!E |
C:G |
WC [cWW][XIX] |
10.7 |
55.76; 54.54 |
1.22 |
-15.0 |
0.45 |
21.86 |
rRNA |
1UN6 |
68!E:107!E |
C:G |
WC [cWW][XIX] |
11.29 |
50.63; 48.38 |
2.24 |
-7.74 |
0.23 |
9.64 |
rRNA |
1UN6 |
69!E:106!E |
U:A |
WC [cWW][XX] |
9.74 |
68.29; 61.13 |
7.16 |
-15.4 |
1.54 |
44.96 |
rRNA |
1UN6 |
70!E:105!E |
G:C |
WC [cWW][XIX] |
10.57 |
60.81; 54.51 |
6.3 |
1.71 |
0.44 |
20.88 |
rRNA |
1UN6 |
71!E:104!E |
G:C |
WC [cWW][XIX] |
10.39 |
51.74; 66.18 |
14.44 |
13.27 |
0.21 |
20.99 |
rRNA |
1UN6 |
72!E:103!E |
U:A |
WC [cWW][XX] |
9.72 |
66.58; 64.67 |
1.9 |
3.67 |
0.01 |
11.56 |
rRNA |
1UN6 |
73!E:102!E |
U:U |
Wb [cWW][XVI] |
8.19 |
87.82; 45.69 |
42.13 |
-4.57 |
0.25 |
8.9 |
rRNA |
1UN6 |
74!E:101!E |
A:A |
rS* [tHH][-] |
11.0 |
14.77; 18.81 |
4.04 |
-77.64 |
0.28 |
25.03 |
rRNA |
1UN6 |
75!E:76!E |
G:U |
pS* [cHS][-] |
6.35 |
143.77; 53.65 |
90.11 |
18.6 |
1.62 |
33.61 |
rRNA |
1UN6 |
76!E:100!E |
U:A |
rH_1 [tWH][XXIV] |
9.45 |
35.57; 28.08 |
7.49 |
-164.62 |
1.73 |
35.81 |
rRNA |
1UN6 |
77!E:99!E |
A:G |
S [tSH][XI] |
9.89 |
5.36; 100.19 |
94.83 |
44.41 |
0.43 |
15.81 |
rRNA |
1UN6 |
78!E:98!E |
C:G |
WC [cWW][XIX] |
10.52 |
59.58; 54.76 |
4.82 |
-0.39 |
0.01 |
6.45 |
rRNA |
1UN6 |
79!E:97!E |
C:G |
WC [cWW][XIX] |
11.36 |
49.32; 57.28 |
7.95 |
7.86 |
0.28 |
16.75 |
rRNA |
1UN6 |
80!E:96!E |
U:U |
WC [---][-] |
9.64 |
49.07; 59.82 |
10.75 |
-6.83 |
0.19 |
27.91 |
rRNA |
1UN6 |
81!E:95!E |
G:C |
Wb* [---][-] |
10.89 |
80.04; 55.48 |
24.56 |
-6.95 |
1.13 |
30.69 |
rRNA |
1UN6 |
82!E:94!E |
G:C |
WC [cWW][XIX] |
11.12 |
58.17; 45.64 |
12.53 |
19.21 |
0.17 |
26.76 |
rRNA |
1UN6 |
83!E:86!E |
G:A |
S(bp:N2-O2P)_2 [---][-] |
10.32 |
97.94; 18.85 |
79.09 |
-134.48 |
0.53 |
26.28 |
rRNA |
1UN6 |
83!E:85!E |
G:A |
S(sb:O2*-N7) [---][-] |
7.55 |
92.36; 28.24 |
64.12 |
-171.53 |
1.22 |
32.58 |
rRNA |
1UN6 |
4!F:115!F |
G:C |
WC [cWW][XIX] |
11.02 |
46.82; 52.87 |
6.05 |
-11.14 |
0.31 |
12.0 |
rRNA |
1UN6 |
5!F:114!F |
C:G |
WC [cWW][XIX] |
10.73 |
46.8; 55.39 |
8.59 |
-13.77 |
0.23 |
19.63 |
rRNA |
1UN6 |
6!F:113!F |
C:G |
WC [cWW][XIX] |
10.52 |
54.24; 53.93 |
0.31 |
-7.53 |
0.04 |
9.71 |
rRNA |
1UN6 |
7!F:112!F |
G:C |
WC [cWW][XIX] |
10.63 |
54.35; 52.29 |
2.06 |
-10.75 |
0.32 |
8.55 |
rRNA |
1UN6 |
8!F:111!F |
G:C |
WC [cWW][XIX] |
10.6 |
54.6; 56.5 |
1.9 |
-9.86 |
0.1 |
15.46 |
rRNA |
1UN6 |
9!F:110!F |
C:G |
WC [cWW][XIX] |
10.55 |
57.72; 55.99 |
1.73 |
-6.96 |
0.08 |
12.5 |
rRNA |
1UN6 |
11!F:66!F |
A:G |
rS [tSS][-] |
8.75 |
53.02; 90.24 |
37.21 |
147.49 |
1.44 |
49.55 |
rRNA |
1UN6 |
14!F:65!F |
C:G |
WC [cWW][XIX] |
10.75 |
52.07; 55.75 |
3.68 |
4.47 |
0.15 |
5.81 |
rRNA |
1UN6 |
15!F:64!F |
C:G |
WC [cWW][XIX] |
10.5 |
58.93; 53.63 |
5.3 |
10.1 |
0.29 |
5.16 |
rRNA |
1UN6 |
16!F:19!F |
U:G |
fS_1 [tSW][-] |
9.62 |
102.23; 22.7 |
79.53 |
172.24 |
0.15 |
5.84 |
rRNA |
1UN6 |
66!F:109!F |
G:U |
Wb [cWW][XXVIII] |
11.0 |
36.91; 57.29 |
20.38 |
1.57 |
0.6 |
13.49 |
rRNA |
1UN6 |
67!F:108!F |
C:G |
WC [cWW][XIX] |
10.63 |
55.43; 52.9 |
2.53 |
-10.44 |
0.06 |
10.15 |
rRNA |
1UN6 |
68!F:107!F |
C:G |
WC [cWW][XIX] |
10.36 |
62.31; 58.83 |
3.49 |
-8.46 |
0.02 |
10.27 |
rRNA |
1UN6 |
69!F:106!F |
U:A |
WC [cWW][XX] |
10.4 |
56.0; 59.35 |
3.35 |
-0.61 |
0.08 |
5.03 |
rRNA |
1UN6 |
70!F:105!F |
G:C |
WC [cWW][XIX] |
10.79 |
58.93; 54.26 |
4.67 |
0.43 |
0.17 |
5.0 |
rRNA |
1UN6 |
71!F:104!F |
G:C |
WC [cWW][XIX] |
10.74 |
60.7; 53.05 |
7.65 |
2.73 |
0.14 |
3.9 |
rRNA |
1UN6 |
72!F:103!F |
U:A |
WC [cWW][XX] |
10.29 |
61.78; 55.27 |
6.5 |
2.36 |
0.07 |
2.48 |
rRNA |
1UN6 |
73!F:102!F |
U:U |
Wb [cWW][XVI] |
8.64 |
86.11; 42.3 |
43.82 |
-0.08 |
0.33 |
10.1 |
rRNA |
1UN6 |
74!F:101!F |
A:A |
rS* [tHH][-] |
11.28 |
17.2; 20.16 |
2.96 |
-72.72 |
1.7 |
32.98 |
rRNA |
1UN6 |
75!F:100!F |
G:A |
S(bp:N2-O2P)_3 [---][-] |
11.27 |
91.1; 62.66 |
28.44 |
-164.35 |
1.12 |
31.27 |
rRNA |
1UN6 |
75!F:76!F |
G:U |
pS* [cHS][-] |
6.78 |
145.37; 52.15 |
93.22 |
16.31 |
0.07 |
12.56 |
rRNA |
1UN6 |
76!F:100!F |
U:A |
rH_1 [tWH][XXIV] |
9.3 |
35.41; 26.07 |
9.34 |
-166.6 |
1.46 |
37.8 |
rRNA |
1UN6 |
76!F:99!F |
U:G |
S*(pb:O2P-N1) [---][-] |
9.55 |
17.91; 74.2 |
56.29 |
94.47 |
2.39 |
15.4 |
rRNA |
1UN6 |
77!F:99!F |
A:G |
S [tSH][XI] |
9.64 |
10.69; 103.41 |
92.71 |
11.88 |
0.16 |
5.56 |
rRNA |
1UN6 |
78!F:98!F |
C:G |
WC [cWW][XIX] |
10.9 |
53.03; 60.34 |
7.31 |
1.14 |
0.44 |
9.9 |
rRNA |
1UN6 |
79!F:97!F |
C:G |
WC [cWW][XIX] |
10.6 |
55.44; 59.16 |
3.72 |
2.99 |
0.06 |
4.97 |
rRNA |
1UN6 |
80!F:96!F |
U:U |
Wb_mo [cWW][XVI] |
9.97 |
63.95; 37.79 |
26.17 |
4.73 |
0.11 |
6.8 |
rRNA |
1UN6 |
81!F:95!F |
G:C |
WC [cWW][XIX] |
10.57 |
54.83; 54.49 |
0.35 |
-6.77 |
0.17 |
12.62 |
rRNA |
1UN6 |
82!F:94!F |
G:C |
WC [cWW][XIX] |
10.79 |
56.55; 49.89 |
6.66 |
4.23 |
0.19 |
16.72 |
rRNA |
1UN6 |
83!F:86!F |
G:A |
S_mo [tSH][XI] |
9.7 |
95.51; 16.52 |
78.98 |
-112.91 |
0.78 |
33.88 |
rRNA |
1UN6 |
83!F:85!F |
G:A |
S(sb:O2*-N7) [---][-] |
7.29 |
91.86; 32.93 |
58.93 |
-160.7 |
1.67 |
38.31 |