Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1VBX
BPC Identified: 32
Ambiguities: 0
| HDV_ribozyme |
1VBX |
101!B:137!B |
G:U |
Wb [cWW][XXVIII] |
10.47 |
37.18; 72.87 |
35.69 |
-3.64 |
0.04 |
15.09 |
| HDV_ribozyme |
1VBX |
102!B:136!B |
G:C |
WC [cWW][XIX] |
10.75 |
63.57; 55.44 |
8.13 |
1.5 |
0.03 |
5.97 |
| HDV_ribozyme |
1VBX |
103!B:135!B |
C:G |
WC [cWW][XIX] |
10.48 |
58.53; 58.77 |
0.24 |
17.99 |
0.33 |
20.03 |
| HDV_ribozyme |
1VBX |
104!B:134!B |
C:G |
WC [cWW][XIX] |
10.58 |
61.58; 54.2 |
7.38 |
16.23 |
0.12 |
15.05 |
| HDV_ribozyme |
1VBX |
105!B:133!B |
G:C |
WC [cWW][XIX] |
10.02 |
52.89; 63.36 |
10.47 |
-1.16 |
0.04 |
8.99 |
| HDV_ribozyme |
1VBX |
106!B:132!B |
G:C |
WC [cWW][XIX] |
10.01 |
51.86; 65.98 |
14.11 |
-4.74 |
0.58 |
18.71 |
| HDV_ribozyme |
1VBX |
107!B:131!B |
C:G |
WC [cWW][XIX] |
10.64 |
58.42; 54.54 |
3.87 |
4.45 |
0.02 |
10.08 |
| HDV_ribozyme |
1VBX |
111!B:172!B |
G:C |
WC [cWW][XIX] |
10.79 |
55.55; 55.13 |
0.42 |
-8.85 |
0.25 |
14.14 |
| HDV_ribozyme |
1VBX |
112!B:171!B |
U:A |
WC [cWW][XX] |
10.89 |
51.99; 53.05 |
1.06 |
-7.59 |
0.12 |
6.88 |
| HDV_ribozyme |
1VBX |
113!B:170!B |
C:G |
WC [cWW][XIX] |
10.88 |
42.52; 56.08 |
13.57 |
-1.83 |
0.11 |
25.8 |
| HDV_ribozyme |
1VBX |
114!B:169!B |
C:G |
WC [cWW][XIX] |
10.73 |
54.4; 48.05 |
6.35 |
-3.66 |
0.08 |
8.97 |
| HDV_ribozyme |
1VBX |
115!B:168!B |
C:G |
WC [cWW][XIX] |
11.17 |
42.11; 55.9 |
13.79 |
-2.57 |
0.23 |
8.42 |
| HDV_ribozyme |
1VBX |
116!B:167!B |
A:U |
WC [cWW][XX] |
10.5 |
51.53; 57.49 |
5.96 |
-3.13 |
0.08 |
2.53 |
| HDV_ribozyme |
1VBX |
117!B:130!B |
G:C |
WC [cWW][XIX] |
10.43 |
54.42; 61.71 |
7.28 |
-15.66 |
0.32 |
14.86 |
| HDV_ribozyme |
1VBX |
118!B:166!B |
C:A |
rpS(bs:O2-O2*) [cSS][-] |
5.35 |
105.65; 149.1 |
43.45 |
-33.86 |
1.5 |
12.2 |
| HDV_ribozyme |
1VBX |
118!B:129!B |
C:G |
WC [cWW][XIX] |
10.37 |
54.18; 57.2 |
3.02 |
-18.2 |
0.01 |
24.88 |
| HDV_ribozyme |
1VBX |
119!B:165!B |
C:A |
rpS(sb:O2*-N3) [cSS][-] |
5.94 |
152.82; 91.29 |
61.53 |
-45.29 |
0.11 |
20.02 |
| HDV_ribozyme |
1VBX |
119!B:128!B |
C:G |
WC [cWW][XIX] |
10.69 |
48.19; 51.45 |
3.25 |
-17.28 |
0.13 |
20.03 |
| HDV_ribozyme |
1VBX |
120!B:163!B |
U:U |
pS [cSH][-] |
6.64 |
143.74; 41.6 |
102.14 |
58.54 |
1.6 |
40.5 |
| HDV_ribozyme |
1VBX |
120!B:125!B |
U:G |
rH_2 [---][-] |
11.66 |
20.17; 6.43 |
13.75 |
46.45 |
0.62 |
2.69 |
| HDV_ribozyme |
1VBX |
120!B:122!B |
U:C |
pS(sp:O2*-O1P) [---][-] |
10.25 |
112.31; 75.19 |
37.12 |
-162.22 |
1.66 |
49.43 |
| HDV_ribozyme |
1VBX |
121!B:142!B |
C:A |
pfS [cSW][-] |
9.15 |
122.91; 31.03 |
91.88 |
-15.18 |
0.53 |
35.36 |
| HDV_ribozyme |
1VBX |
121!B:139!B |
C:G |
WC [cWW][XIX] |
10.78 |
50.2; 53.53 |
3.34 |
-18.13 |
0.26 |
23.81 |
| HDV_ribozyme |
1VBX |
122!B:138!B |
C:G |
WC [cWW][XIX] |
10.32 |
58.34; 55.35 |
2.99 |
-8.28 |
0.11 |
20.95 |
| HDV_ribozyme |
1VBX |
129!B:166!B |
G:A |
rS [tSS][-] |
8.27 |
87.89; 55.28 |
32.62 |
160.71 |
0.92 |
36.98 |
| HDV_ribozyme |
1VBX |
140!B:142!B |
G:A |
pS_1 [cSH][-] |
7.81 |
138.55; 29.12 |
109.43 |
-26.15 |
0.21 |
47.65 |
| HDV_ribozyme |
1VBX |
141!B:161!B |
C:G |
rH_1 [tWH][-] |
11.0 |
17.96; 5.96 |
12.0 |
-147.43 |
0.01 |
4.04 |
| HDV_ribozyme |
1VBX |
143!B:162!B |
A:G |
WC [cWW][VIII] |
12.34 |
47.96; 54.47 |
6.51 |
-13.9 |
0.75 |
21.89 |
| HDV_ribozyme |
1VBX |
144!B:161!B |
C:G |
WC [cWW][XIX] |
10.54 |
55.97; 54.02 |
1.95 |
-15.22 |
0.4 |
21.96 |
| HDV_ribozyme |
1VBX |
145!B:160!B |
A:U |
WC [cWW][XX] |
10.36 |
57.56; 56.48 |
1.08 |
-11.15 |
0.1 |
12.12 |
| HDV_ribozyme |
1VBX |
146!B:159!B |
C:G |
WC [cWW][XIX] |
10.56 |
54.86; 54.97 |
0.11 |
-7.46 |
0.1 |
14.02 |
| HDV_ribozyme |
1VBX |
147!B:158!B |
C:G |
WC [cWW][XIX] |
10.8 |
54.64; 51.36 |
3.28 |
2.07 |
0.03 |
2.06 |