Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VBY BPC Identified: 35 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VBY 101!B:137!B G:U Wb [cWW][XXVIII] 10.39 38.95; 69.72 30.77 -1.57 0.18 11.8
HDV_ribozyme 1VBY 102!B:136!B G:C WC [cWW][XIX] 10.38 61.42; 58.19 3.23 -0.5 0.03 1.3
HDV_ribozyme 1VBY 103!B:135!B C:G WC [cWW][XIX] 10.68 58.47; 61.02 2.55 9.83 0.33 8.63
HDV_ribozyme 1VBY 104!B:134!B C:G WC [cWW][XIX] 10.7 58.93; 54.98 3.95 5.2 0.33 1.92
HDV_ribozyme 1VBY 105!B:133!B G:C WC [cWW][XIX] 10.25 58.41; 60.63 2.21 -4.28 0.07 11.93
HDV_ribozyme 1VBY 106!B:132!B G:C WC [cWW][XIX] 10.14 51.29; 61.17 9.88 -1.56 0.43 15.29
HDV_ribozyme 1VBY 107!B:131!B C:G WC [cWW][XIX] 10.51 58.48; 54.56 3.92 3.99 0.11 10.63
HDV_ribozyme 1VBY 111!B:172!B G:C WC [cWW][XIX] 10.66 57.03; 55.78 1.24 -8.35 0.13 11.95
HDV_ribozyme 1VBY 112!B:171!B U:A WC [cWW][XX] 10.86 51.82; 51.04 0.78 -6.07 0.23 3.94
HDV_ribozyme 1VBY 113!B:170!B C:G WC [cWW][XIX] 10.76 49.76; 54.9 5.13 -8.89 0.15 13.75
HDV_ribozyme 1VBY 114!B:169!B C:G WC [cWW][XIX] 10.52 56.72; 53.97 2.75 -12.89 0.86 8.31
HDV_ribozyme 1VBY 115!B:168!B C:G WC [cWW][XIX] 10.75 48.92; 56.67 7.75 -5.12 0.14 10.4
HDV_ribozyme 1VBY 116!B:167!B A:U WC [cWW][XX] 10.63 51.46; 55.64 4.18 -1.2 0.33 4.33
HDV_ribozyme 1VBY 117!B:130!B G:C WC [cWW][XIX] 10.72 54.56; 55.72 1.17 -14.85 0.15 16.41
HDV_ribozyme 1VBY 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.31 104.11; 153.8 49.69 -39.08 0.48 13.93
HDV_ribozyme 1VBY 118!B:129!B C:G WC [cWW][XIX] 10.53 54.41; 53.56 0.85 -18.17 0.4 19.42
HDV_ribozyme 1VBY 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.82 150.4; 96.35 54.05 -53.35 0.31 21.42
HDV_ribozyme 1VBY 119!B:128!B C:G WC [cWW][XIX] 10.79 49.73; 50.47 0.74 -19.43 0.22 19.76
HDV_ribozyme 1VBY 119!B:125!B C:G rH_1 [tWH][-] 11.72 18.91; 25.24 6.33 109.9 1.37 23.19
HDV_ribozyme 1VBY 120!B:125!B U:G rH_2 [---][-] 11.66 17.84; 8.0 9.83 20.97 0.09 2.12
HDV_ribozyme 1VBY 120!B:122!B U:C pS(sp:O2*-O2P) [---][-] 10.15 110.05; 76.56 33.49 -162.3 2.31 42.55
HDV_ribozyme 1VBY 121!B:142!B C:A pfS [cSW][-] 9.19 120.51; 35.04 85.47 -10.66 0.21 28.36
HDV_ribozyme 1VBY 121!B:139!B C:G WC [cWW][XIX] 10.93 47.82; 49.9 2.08 -17.64 0.56 27.58
HDV_ribozyme 1VBY 122!B:138!B C:G WC [cWW][XIX] 10.79 53.45; 56.33 2.87 -7.24 0.19 13.45
HDV_ribozyme 1VBY 129!B:166!B G:A rS [tSS][-] 8.25 83.28; 57.87 25.4 161.08 0.7 32.98
HDV_ribozyme 1VBY 140!B:142!B G:A pS_1 [cSH][-] 7.98 137.28; 24.82 112.47 -27.82 0.03 45.21
HDV_ribozyme 1VBY 141!B:161!B C:G rH_1 [tWH][-] 11.26 18.2; 4.74 13.46 -127.6 0.01 5.72
HDV_ribozyme 1VBY 141!B:144!B C:C H_2 [---][-] 10.64 75.87; 13.66 62.21 49.0 0.43 16.35
HDV_ribozyme 1VBY 143!B:162!B A:G WC [cWW][VIII] 12.2 51.68; 49.31 2.38 -2.94 0.37 13.91
HDV_ribozyme 1VBY 144!B:161!B C:G WC [cWW][XIX] 10.6 55.12; 54.85 0.27 -16.11 0.08 17.56
HDV_ribozyme 1VBY 145!B:160!B A:U WC [cWW][XX] 10.4 55.89; 56.58 0.68 -13.26 0.0 14.63
HDV_ribozyme 1VBY 146!B:159!B C:G WC [cWW][XIX] 10.47 57.03; 53.79 3.24 -8.11 0.16 13.53
HDV_ribozyme 1VBY 147!B:158!B C:G WC [cWW][XIX] 10.6 55.95; 52.99 2.97 0.02 0.34 2.4
HDV_ribozyme 1VBY 155!B:157!B U:C pS [cSH][-] 9.26 111.98; 27.64 84.34 17.72 0.13 13.24
HDV_ribozyme 1VBY 155!B:156!B U:C pS [cSH][-] 6.67 135.33; 39.49 95.84 2.75 1.12 17.43