Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VBZ BPC Identified: 33 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VBZ 101!B:137!B G:U Wb [cWW][XXVIII] 10.27 45.17; 65.56 20.39 2.8 0.25 8.89
HDV_ribozyme 1VBZ 102!B:136!B G:C WC [cWW][XIX] 9.87 61.96; 63.48 1.52 4.72 0.65 13.35
HDV_ribozyme 1VBZ 103!B:135!B C:G WC [cWW][XIX] 10.29 60.07; 60.6 0.53 13.37 0.64 10.66
HDV_ribozyme 1VBZ 104!B:134!B C:G WC [cWW][XIX] 10.49 59.63; 51.93 7.7 6.76 0.01 13.61
HDV_ribozyme 1VBZ 105!B:133!B G:C WC [cWW][XIX] 10.31 59.27; 63.13 3.85 -3.4 0.27 7.32
HDV_ribozyme 1VBZ 106!B:132!B G:C WC [cWW][XIX] 9.94 51.46; 64.94 13.48 -5.5 0.48 18.36
HDV_ribozyme 1VBZ 107!B:131!B C:G WC [cWW][XIX] 10.65 57.13; 48.58 8.55 1.87 0.36 11.82
HDV_ribozyme 1VBZ 111!B:172!B G:C WC [cWW][XIX] 10.63 56.93; 59.87 2.94 -10.86 0.2 13.24
HDV_ribozyme 1VBZ 112!B:171!B U:A WC [cWW][XX] 10.33 55.62; 51.03 4.6 -13.54 0.21 13.8
HDV_ribozyme 1VBZ 113!B:170!B C:G WC [cWW][XIX] 10.61 47.89; 60.07 12.17 -7.21 0.36 17.14
HDV_ribozyme 1VBZ 114!B:169!B C:G WC [cWW][XIX] 10.44 56.25; 58.57 2.32 -7.32 0.11 13.17
HDV_ribozyme 1VBZ 115!B:168!B C:G WC [cWW][XIX] 10.82 50.93; 53.39 2.45 0.09 0.08 6.09
HDV_ribozyme 1VBZ 116!B:167!B A:U WC [cWW][XX] 10.25 57.73; 62.96 5.23 -8.43 0.07 8.24
HDV_ribozyme 1VBZ 117!B:130!B G:C WC [cWW][XIX] 10.22 53.31; 63.34 10.03 -14.61 0.14 17.54
HDV_ribozyme 1VBZ 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.14 110.22; 152.11 41.89 -34.43 1.46 11.45
HDV_ribozyme 1VBZ 118!B:129!B C:G WC [cWW][XIX] 10.27 58.08; 57.84 0.24 -19.75 0.08 23.14
HDV_ribozyme 1VBZ 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.88 153.13; 96.55 56.58 -45.25 0.22 16.98
HDV_ribozyme 1VBZ 119!B:128!B C:G WC [cWW][XIX] 10.58 50.74; 48.9 1.84 -18.2 0.12 18.31
HDV_ribozyme 1VBZ 120!B:163!B U:U pS [cSH][-] 6.89 142.59; 35.16 107.42 71.15 1.66 49.48
HDV_ribozyme 1VBZ 120!B:125!B U:G rH_2 [---][-] 11.6 18.8; 6.38 12.42 41.94 0.46 3.55
HDV_ribozyme 1VBZ 121!B:142!B C:A pfS [cSW][-] 9.05 122.89; 35.07 87.82 -14.84 0.58 28.16
HDV_ribozyme 1VBZ 121!B:139!B C:G WC [cWW][XIX] 10.53 51.26; 55.47 4.21 -16.89 0.85 30.64
HDV_ribozyme 1VBZ 122!B:138!B C:G WC [cWW][XIX] 10.39 53.27; 56.36 3.09 -3.79 0.04 11.67
HDV_ribozyme 1VBZ 129!B:166!B G:A rS [tSS][-] 8.26 87.34; 57.64 29.7 159.67 0.76 33.32
HDV_ribozyme 1VBZ 140!B:142!B G:A pS_1 [cSH][-] 7.81 143.48; 26.15 117.33 -21.1 0.03 45.01
HDV_ribozyme 1VBZ 141!B:161!B C:G rH_1 [tWH][-] 10.99 19.58; 4.61 14.97 -135.83 0.08 8.51
HDV_ribozyme 1VBZ 141!B:144!B C:C rWC_o [tWW][XV] 10.41 77.99; 14.95 63.04 71.75 0.12 21.14
HDV_ribozyme 1VBZ 143!B:162!B A:G WC [cWW][VIII] 12.29 51.0; 55.27 4.27 -14.11 0.22 17.37
HDV_ribozyme 1VBZ 144!B:161!B C:G WC [cWW][XIX] 10.49 58.9; 54.11 4.79 -19.47 0.34 18.54
HDV_ribozyme 1VBZ 145!B:160!B A:U WC [cWW][XX] 10.4 54.02; 55.45 1.43 -13.61 0.08 12.56
HDV_ribozyme 1VBZ 146!B:159!B C:G WC [cWW][XIX] 10.5 56.99; 56.14 0.86 -9.1 0.11 14.27
HDV_ribozyme 1VBZ 147!B:158!B C:G WC [cWW][XIX] 10.73 53.53; 52.01 1.52 1.16 0.1 1.58
HDV_ribozyme 1VBZ 155!B:156!B U:C pS [cSH][-] 6.82 138.59; 40.44 98.15 5.68 0.26 13.39