Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VC0 BPC Identified: 32 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VC0 101!B:137!B G:U Wb [cWW][XXVIII] 10.65 43.32; 62.88 19.57 0.28 0.08 14.66
HDV_ribozyme 1VC0 102!B:136!B G:C WC [cWW][XIX] 10.34 64.55; 58.94 5.61 2.29 0.09 5.98
HDV_ribozyme 1VC0 103!B:135!B C:G WC [cWW][XIX] 10.48 65.14; 59.85 5.29 12.18 0.51 12.61
HDV_ribozyme 1VC0 104!B:134!B C:G WC [cWW][XIX] 10.56 58.18; 56.64 1.54 9.44 0.44 5.87
HDV_ribozyme 1VC0 105!B:133!B G:C WC [cWW][XIX] 10.2 56.68; 64.82 8.14 -3.22 0.05 6.73
HDV_ribozyme 1VC0 106!B:132!B G:C WC [cWW][XIX] 10.27 55.88; 60.24 4.36 -2.44 0.3 9.51
HDV_ribozyme 1VC0 107!B:131!B C:G WC [cWW][XIX] 10.34 62.58; 51.21 11.37 1.13 0.16 10.83
HDV_ribozyme 1VC0 111!B:172!B G:C WC [cWW][XIX] 10.84 54.99; 57.63 2.64 -5.66 0.07 7.97
HDV_ribozyme 1VC0 112!B:171!B U:A WC [cWW][XX] 10.68 51.0; 52.53 1.54 -7.66 0.48 3.67
HDV_ribozyme 1VC0 113!B:170!B C:G WC [cWW][XIX] 10.89 46.16; 52.09 5.93 -9.95 0.38 21.2
HDV_ribozyme 1VC0 114!B:169!B C:G WC [cWW][XIX] 10.59 54.36; 48.3 6.06 -0.47 0.02 4.92
HDV_ribozyme 1VC0 115!B:168!B C:G WC [cWW][XIX] 10.89 48.82; 55.67 6.85 -2.96 0.01 7.29
HDV_ribozyme 1VC0 116!B:167!B A:U WC [cWW][XX] 10.18 58.39; 62.41 4.01 -3.92 0.01 4.01
HDV_ribozyme 1VC0 117!B:130!B G:C WC [cWW][XIX] 10.59 51.5; 57.49 6.0 -14.19 0.26 15.66
HDV_ribozyme 1VC0 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.41 104.26; 153.92 49.66 -40.47 1.17 14.04
HDV_ribozyme 1VC0 118!B:129!B C:G WC [cWW][XIX] 10.47 55.17; 55.65 0.47 -15.7 0.14 19.72
HDV_ribozyme 1VC0 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.77 152.64; 93.55 59.09 -42.67 0.22 20.07
HDV_ribozyme 1VC0 119!B:128!B C:G WC [cWW][XIX] 10.67 50.16; 46.2 3.96 -14.69 0.04 18.32
HDV_ribozyme 1VC0 120!B:163!B U:U pS [cSH][-] 7.05 143.06; 37.76 105.31 59.75 1.96 45.53
HDV_ribozyme 1VC0 120!B:125!B U:G rH_2 [---][-] 11.75 17.66; 5.05 12.6 30.39 0.26 4.73
HDV_ribozyme 1VC0 121!B:142!B C:A pfS [cSW][-] 9.17 119.45; 32.9 86.55 -11.98 0.54 30.1
HDV_ribozyme 1VC0 121!B:139!B C:G WC [cWW][XIX] 10.65 48.62; 54.93 6.31 -14.69 0.58 25.57
HDV_ribozyme 1VC0 122!B:138!B C:G WC [cWW][XIX] 10.49 51.84; 57.82 5.98 -3.01 0.15 11.44
HDV_ribozyme 1VC0 129!B:166!B G:A rS [tSS][-] 8.1 86.24; 58.63 27.61 160.88 0.66 33.54
HDV_ribozyme 1VC0 140!B:142!B G:A pS_1 [cSH][-] 7.86 137.32; 28.26 109.06 -25.58 0.33 46.21
HDV_ribozyme 1VC0 141!B:161!B C:G rH_1 [tWH][-] 11.05 18.65; 4.24 14.41 -158.76 0.11 6.8
HDV_ribozyme 1VC0 141!B:144!B C:C H_2 [---][-] 10.58 77.22; 15.42 61.8 60.54 0.04 24.15
HDV_ribozyme 1VC0 143!B:162!B A:G WC [cWW][VIII] 12.34 48.85; 53.45 4.6 -16.55 0.35 21.31
HDV_ribozyme 1VC0 144!B:161!B C:G WC [cWW][XIX] 10.6 55.87; 54.43 1.44 -17.48 0.14 21.81
HDV_ribozyme 1VC0 145!B:160!B A:U WC [cWW][XX] 10.43 55.66; 56.7 1.05 -12.16 0.04 12.82
HDV_ribozyme 1VC0 146!B:159!B C:G WC [cWW][XIX] 10.51 55.29; 54.68 0.62 -10.35 0.01 14.26
HDV_ribozyme 1VC0 147!B:158!B C:G WC [cWW][XIX] 10.69 54.47; 52.63 1.84 -2.48 0.05 3.08