Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VC5 BPC Identified: 28 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VC5 101!B:137!B G:U Wb [cWW][XXVIII] 10.44 44.41; 74.63 30.22 4.21 0.36 1.64
HDV_ribozyme 1VC5 102!B:136!B G:C WC [cWW][XIX] 10.53 59.84; 57.9 1.94 10.82 1.3 2.13
HDV_ribozyme 1VC5 103!B:135!B C:G WC [cWW][XIX] 10.84 50.33; 53.63 3.3 8.28 0.45 5.35
HDV_ribozyme 1VC5 104!B:134!B C:G WC [cWW][XIX] 10.67 54.68; 55.21 0.52 -0.44 0.1 4.51
HDV_ribozyme 1VC5 105!B:133!B G:C WC [cWW][XIX] 10.74 55.39; 53.0 2.4 1.18 0.24 5.67
HDV_ribozyme 1VC5 106!B:132!B G:C WC [cWW][XIX] 10.75 54.21; 50.0 4.21 4.37 0.19 15.6
HDV_ribozyme 1VC5 107!B:131!B C:G WC [cWW][XIX] 10.69 57.5; 58.66 1.16 -1.58 0.22 14.59
HDV_ribozyme 1VC5 112!B:171!B U:A WC [cWW][XX] 11.15 49.05; 49.54 0.49 8.14 0.25 7.13
HDV_ribozyme 1VC5 113!B:170!B C:G WC [cWW][XIX] 11.3 46.9; 49.48 2.58 -3.81 0.09 6.17
HDV_ribozyme 1VC5 114!B:169!B C:G WC [cWW][XIX] 10.95 53.12; 54.56 1.45 -0.73 0.03 9.33
HDV_ribozyme 1VC5 115!B:168!B C:G WC [cWW][XIX] 11.38 42.64; 50.85 8.21 3.55 0.03 4.72
HDV_ribozyme 1VC5 116!B:167!B A:U WC [cWW][XX] 10.33 56.94; 59.55 2.62 -8.95 0.25 14.52
HDV_ribozyme 1VC5 117!B:130!B G:C WC [cWW][XIX] 10.93 51.25; 50.28 0.96 -10.48 0.23 14.7
HDV_ribozyme 1VC5 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.72 105.62; 150.95 45.33 -30.58 1.92 9.11
HDV_ribozyme 1VC5 118!B:129!B C:G WC [cWW][XIX] 10.75 53.46; 53.24 0.22 -15.61 0.32 24.11
HDV_ribozyme 1VC5 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.7 148.74; 93.65 55.09 -40.22 0.53 19.82
HDV_ribozyme 1VC5 119!B:128!B C:G WC [cWW][XIX] 11.13 47.72; 47.91 0.18 -16.25 0.19 21.2
HDV_ribozyme 1VC5 121!B:142!B C:A pfS [cSW][-] 9.23 122.03; 30.47 91.56 -23.23 0.71 31.57
HDV_ribozyme 1VC5 121!B:139!B C:G WC [cWW][XIX] 10.86 48.17; 52.12 3.95 -15.51 0.6 36.65
HDV_ribozyme 1VC5 122!B:138!B C:G WC [cWW][XIX] 10.82 52.18; 54.14 1.95 -9.79 0.29 22.31
HDV_ribozyme 1VC5 129!B:166!B G:A rS [tSS][-] 8.57 84.96; 58.32 26.64 160.04 0.99 30.02
HDV_ribozyme 1VC5 141!B:161!B C:G rH_1 [tWH][-] 11.48 15.49; 11.82 3.68 -174.56 0.11 2.37
HDV_ribozyme 1VC5 143!B:162!B A:G WC [cWW][VIII] 12.85 43.76; 54.46 10.7 -18.71 0.45 30.04
HDV_ribozyme 1VC5 144!B:161!B C:G WC [cWW][XIX] 10.99 58.06; 46.7 11.37 -14.61 0.39 22.75
HDV_ribozyme 1VC5 145!B:160!B A:U WC [cWW][XX] 10.34 56.06; 57.38 1.31 -9.19 0.09 17.75
HDV_ribozyme 1VC5 146!B:159!B C:G WC [cWW][XIX] 10.74 56.3; 56.57 0.27 0.0 0.07 13.05
HDV_ribozyme 1VC5 147!B:158!B C:G WC [cWW][XIX] 10.68 52.94; 53.67 0.73 -6.54 0.25 18.41
HDV_ribozyme 1VC5 155!B:157!B U:C pS [cSH][-] 9.25 105.05; 31.05 74.01 10.2 0.08 25.55