Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VC6 BPC Identified: 32 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VC6 101!B:137!B G:U Wb [cWW][XXVIII] 10.86 36.87; 70.33 33.45 -1.33 0.11 6.68
HDV_ribozyme 1VC6 102!B:136!B G:C WC [cWW][XIX] 10.43 51.19; 56.72 5.53 -2.26 0.07 8.6
HDV_ribozyme 1VC6 103!B:135!B C:G WC [cWW][XIX] 10.45 60.94; 55.09 5.85 2.72 0.37 14.73
HDV_ribozyme 1VC6 104!B:134!B C:G WC [cWW][XIX] 10.19 63.11; 54.5 8.61 9.68 0.16 8.42
HDV_ribozyme 1VC6 105!B:133!B G:C WC [cWW][XIX] 10.32 53.6; 58.29 4.68 -5.25 0.18 10.08
HDV_ribozyme 1VC6 106!B:132!B G:C WC [cWW][XIX] 10.16 53.81; 60.43 6.62 -5.41 0.16 11.6
HDV_ribozyme 1VC6 107!B:131!B C:G WC [cWW][XIX] 10.45 59.75; 51.77 7.97 -2.09 0.23 10.0
HDV_ribozyme 1VC6 111!B:172!B G:C WC [cWW][XIX] 10.69 57.18; 55.71 1.47 -8.49 0.17 10.72
HDV_ribozyme 1VC6 112!B:171!B U:A WC [cWW][XX] 10.4 52.61; 53.02 0.42 -10.28 0.04 12.2
HDV_ribozyme 1VC6 113!B:170!B C:G WC [cWW][XIX] 10.55 49.95; 56.45 6.5 -3.44 0.53 14.39
HDV_ribozyme 1VC6 114!B:169!B C:G WC [cWW][XIX] 10.33 57.17; 54.77 2.4 -3.25 0.1 7.65
HDV_ribozyme 1VC6 115!B:168!B C:G WC [cWW][XIX] 10.78 52.39; 53.09 0.71 -1.65 0.03 5.04
HDV_ribozyme 1VC6 116!B:167!B A:U WC [cWW][XX] 10.19 58.28; 60.39 2.11 -6.93 0.06 8.02
HDV_ribozyme 1VC6 117!B:130!B G:C WC [cWW][XIX] 10.58 54.77; 56.65 1.88 -13.13 0.05 17.42
HDV_ribozyme 1VC6 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.27 103.52; 152.91 49.38 -34.57 2.0 11.61
HDV_ribozyme 1VC6 118!B:129!B C:G WC [cWW][XIX] 10.37 53.61; 58.78 5.16 -17.26 0.25 26.26
HDV_ribozyme 1VC6 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.78 152.89; 91.37 61.52 -53.14 0.07 23.38
HDV_ribozyme 1VC6 119!B:128!B C:G WC [cWW][XIX] 10.53 51.0; 45.28 5.71 -15.66 0.08 20.75
HDV_ribozyme 1VC6 120!B:125!B U:G rH_2 [---][-] 11.43 23.09; 7.89 15.2 26.14 0.44 3.52
HDV_ribozyme 1VC6 121!B:142!B C:A pfS [cSW][-] 9.22 119.08; 32.39 86.68 -11.91 0.71 26.09
HDV_ribozyme 1VC6 121!B:139!B C:G WC [cWW][XIX] 10.7 48.67; 53.29 4.61 -12.79 0.73 24.83
HDV_ribozyme 1VC6 122!B:138!B C:G WC [cWW][XIX] 10.43 52.01; 59.26 7.25 5.28 0.32 13.03
HDV_ribozyme 1VC6 129!B:166!B G:A rS [tSS][-] 8.13 88.72; 56.59 32.13 161.62 0.95 35.55
HDV_ribozyme 1VC6 140!B:142!B G:A pS_1 [cSH][-] 7.89 137.76; 27.67 110.08 -24.48 0.36 45.53
HDV_ribozyme 1VC6 141!B:161!B C:G rH_1 [tWH][-] 11.01 18.34; 5.72 12.62 -167.6 0.01 4.35
HDV_ribozyme 1VC6 143!B:162!B A:G WC [cWW][VIII] 12.22 51.73; 53.42 1.69 -15.42 0.59 21.83
HDV_ribozyme 1VC6 144!B:161!B C:G WC [cWW][XIX] 10.74 54.96; 53.12 1.84 -12.88 0.02 14.71
HDV_ribozyme 1VC6 145!B:160!B A:U WC [cWW][XX] 10.32 57.35; 53.94 3.4 -14.53 0.05 15.87
HDV_ribozyme 1VC6 146!B:159!B C:G WC [cWW][XIX] 10.42 56.62; 57.48 0.86 -7.14 0.01 13.29
HDV_ribozyme 1VC6 147!B:158!B C:G WC [cWW][XIX] 10.61 52.35; 51.95 0.4 -0.21 0.03 2.09
HDV_ribozyme 1VC6 155!B:157!B U:C pS [cSH][-] 9.27 115.09; 21.58 93.51 15.88 0.77 4.92
HDV_ribozyme 1VC6 155!B:156!B U:C pS [cSH][-] 6.77 137.31; 41.9 95.41 2.42 1.88 3.49