Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1VC7 BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 1VC7 101!B:137!B G:U Wb [cWW][XXVIII] 10.35 39.78; 64.92 25.14 -5.97 0.26 9.95
HDV_ribozyme 1VC7 102!B:136!B G:C WC [cWW][XIX] 10.23 57.32; 61.28 3.96 -2.06 0.12 5.76
HDV_ribozyme 1VC7 103!B:135!B C:G WC_Mo [cWW][XIX] 10.74 61.43; 63.07 1.64 10.58 0.27 12.68
HDV_ribozyme 1VC7 104!B:134!B C:G WC [cWW][XIX] 10.84 63.32; 55.97 7.35 7.0 0.05 16.67
HDV_ribozyme 1VC7 105!B:133!B G:C WC [cWW][XIX] 10.21 60.08; 59.34 0.75 -0.45 0.37 12.72
HDV_ribozyme 1VC7 106!B:132!B G:C WC [cWW][XIX] 10.11 53.66; 62.17 8.51 -6.26 0.27 13.83
HDV_ribozyme 1VC7 107!B:131!B C:G WC [cWW][XIX] 10.66 61.51; 53.57 7.94 0.84 0.28 9.21
HDV_ribozyme 1VC7 111!B:172!B G:C WC [cWW][XIX] 10.71 52.95; 66.16 13.21 -9.18 0.05 12.75
HDV_ribozyme 1VC7 112!B:171!B U:A WC [cWW][XX] 10.39 53.47; 56.4 2.93 -8.88 0.53 6.95
HDV_ribozyme 1VC7 113!B:170!B C:G WC [cWW][XIX] 10.75 45.06; 55.67 10.61 -8.89 0.52 25.83
HDV_ribozyme 1VC7 114!B:169!B C:G WC [cWW][XIX] 10.64 56.57; 55.58 0.99 -6.08 0.0 8.86
HDV_ribozyme 1VC7 115!B:168!B C:G WC [cWW][XIX] 10.64 50.94; 55.06 4.12 -3.8 0.01 5.77
HDV_ribozyme 1VC7 116!B:167!B A:U WC [cWW][XX] 9.87 60.31; 63.66 3.35 -11.59 0.02 15.85
HDV_ribozyme 1VC7 117!B:130!B G:C WC [cWW][XIX] 10.9 55.51; 58.61 3.1 -9.71 0.06 11.04
HDV_ribozyme 1VC7 118!B:166!B C:A rpS(bs:O2-O2*) [cSS][-] 5.17 98.66; 159.89 61.23 -32.44 0.35 17.05
HDV_ribozyme 1VC7 118!B:129!B C:G WC [cWW][XIX] 10.61 50.86; 55.3 4.44 -14.15 0.3 15.31
HDV_ribozyme 1VC7 119!B:165!B C:A rpS(sb:O2*-N3) [cSS][-] 5.9 149.86; 93.1 56.76 -44.4 0.09 24.46
HDV_ribozyme 1VC7 119!B:128!B C:G WC [cWW][XIX] 10.78 48.2; 47.84 0.35 -17.28 0.2 16.44
HDV_ribozyme 1VC7 120!B:125!B U:G rH_2 [---][-] 11.52 24.06; 0.93 23.13 8.64 0.01 2.51
HDV_ribozyme 1VC7 121!B:142!B C:A pfS [cSW][-] 9.03 121.67; 31.4 90.27 -14.76 0.43 30.33
HDV_ribozyme 1VC7 121!B:139!B C:G WC [cWW][XIX] 10.67 46.89; 53.96 7.07 -18.98 0.54 29.73
HDV_ribozyme 1VC7 122!B:138!B C:G WC [cWW][XIX] 10.61 51.0; 53.95 2.95 -5.8 0.23 14.34
HDV_ribozyme 1VC7 129!B:166!B G:A rS [tSS][-] 8.13 83.41; 58.6 24.81 164.34 0.58 32.36
HDV_ribozyme 1VC7 141!B:161!B C:G rH_1 [tWH][-] 10.88 18.53; 6.17 12.36 163.04 0.04 4.49
HDV_ribozyme 1VC7 143!B:162!B A:G WC [cWW][VIII] 12.39 53.65; 49.67 3.98 -18.39 0.39 24.25
HDV_ribozyme 1VC7 144!B:161!B C:G WC [cWW][XIX] 10.74 55.57; 53.99 1.58 -18.94 0.29 24.71
HDV_ribozyme 1VC7 145!B:160!B A:U WC [cWW][XX] 10.35 57.14; 57.53 0.39 -12.78 0.22 15.07
HDV_ribozyme 1VC7 146!B:159!B C:G WC [cWW][XIX] 10.48 54.18; 54.29 0.11 -10.92 0.12 17.28
HDV_ribozyme 1VC7 147!B:158!B C:G WC [cWW][XIX] 10.74 51.39; 54.13 2.73 -4.11 0.16 6.57
HDV_ribozyme 1VC7 155!B:156!B U:C pS [cSH][-] 6.45 140.04; 46.47 93.56 -7.86 0.81 21.94