Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1VFG
BPC Identified: 24
Ambiguities: 0
| tRNA |
1VFG |
1!C:72!C |
G:C |
WC [cWW][XIX] |
10.77 |
52.87; 54.94 |
2.06 |
15.28 |
0.81 |
28.61 |
| tRNA |
1VFG |
2!C:71!C |
G:C |
WC [cWW][XIX] |
10.26 |
52.27; 57.65 |
5.38 |
15.79 |
1.0 |
20.35 |
| tRNA |
1VFG |
3!C:70!C |
C:G |
WC [cWW][XIX] |
10.77 |
54.21; 50.91 |
3.3 |
7.99 |
0.13 |
15.82 |
| tRNA |
1VFG |
4!C:69!C |
C:G |
WC [cWW][XIX] |
10.42 |
51.71; 55.98 |
4.28 |
-3.8 |
0.13 |
29.59 |
| tRNA |
1VFG |
5!C:68!C |
A:U |
WC [cWW][XX] |
9.56 |
72.86; 58.67 |
14.19 |
-16.95 |
0.27 |
13.86 |
| tRNA |
1VFG |
6!C:67!C |
G:C |
WC [cWW][XIX] |
9.93 |
62.81; 62.04 |
0.77 |
-10.74 |
0.76 |
48.93 |
| tRNA |
1VFG |
7!C:66!C |
G:C |
WC [cWW][XIX] |
10.02 |
58.79; 63.5 |
4.71 |
-14.2 |
1.86 |
57.31 |
| tRNA |
1VFG |
49!C:65!C |
G:C |
WC [cWW][XIX] |
9.75 |
61.21; 60.13 |
1.08 |
-18.47 |
1.48 |
65.71 |
| tRNA |
1VFG |
50!C:64!C |
G:C |
WC [cWW][XIX] |
9.67 |
64.2; 60.28 |
3.92 |
-9.34 |
2.01 |
60.72 |
| tRNA |
1VFG |
51!C:63!C |
C:G |
WC [cWW][XIX] |
10.92 |
54.25; 52.07 |
2.18 |
-3.48 |
0.15 |
15.08 |
| tRNA |
1VFG |
52!C:62!C |
G:C |
WC [cWW][XIX] |
11.13 |
46.52; 46.88 |
0.35 |
-5.8 |
0.31 |
12.16 |
| tRNA |
1VFG |
53!C:61!C |
G:C |
WC [cWW][XIX] |
9.57 |
60.25; 57.92 |
2.33 |
-5.04 |
0.77 |
43.39 |
| tRNA |
1VFG |
1!D:72!D |
G:C |
WC [cWW][XIX] |
10.73 |
52.99; 55.14 |
2.15 |
15.38 |
0.8 |
28.47 |
| tRNA |
1VFG |
2!D:71!D |
G:C |
WC [cWW][XIX] |
10.28 |
52.47; 57.41 |
4.94 |
15.56 |
1.02 |
19.72 |
| tRNA |
1VFG |
3!D:70!D |
C:G |
WC [cWW][XIX] |
10.75 |
54.43; 51.02 |
3.42 |
8.63 |
0.23 |
15.3 |
| tRNA |
1VFG |
4!D:69!D |
C:G |
WC [cWW][XIX] |
10.4 |
51.81; 56.17 |
4.36 |
-4.22 |
0.09 |
29.3 |
| tRNA |
1VFG |
5!D:68!D |
A:U |
WC [cWW][XX] |
9.56 |
72.6; 58.67 |
13.93 |
-17.49 |
0.29 |
14.36 |
| tRNA |
1VFG |
6!D:67!D |
G:C |
WC [cWW][XIX] |
9.93 |
63.07; 62.26 |
0.81 |
-10.29 |
0.73 |
49.02 |
| tRNA |
1VFG |
7!D:66!D |
G:C |
WC [cWW][XIX] |
10.03 |
58.63; 63.34 |
4.71 |
-14.38 |
1.84 |
56.74 |
| tRNA |
1VFG |
49!D:65!D |
G:C |
WC [cWW][XIX] |
9.74 |
61.51; 60.06 |
1.45 |
-18.73 |
1.52 |
65.96 |
| tRNA |
1VFG |
50!D:64!D |
G:C |
WC [cWW][XIX] |
9.66 |
64.51; 60.64 |
3.87 |
-9.12 |
2.03 |
61.2 |
| tRNA |
1VFG |
51!D:63!D |
C:G |
WC [cWW][XIX] |
10.92 |
54.2; 51.83 |
2.37 |
-3.93 |
0.12 |
15.34 |
| tRNA |
1VFG |
52!D:62!D |
G:C |
WC [cWW][XIX] |
11.14 |
46.44; 46.88 |
0.44 |
-5.14 |
0.33 |
12.22 |
| tRNA |
1VFG |
53!D:61!D |
G:C |
WC [cWW][XIX] |
9.57 |
59.89; 58.01 |
1.89 |
-4.67 |
0.8 |
42.68 |