Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1WSU
BPC Identified: 28
Ambiguities: 0
| mRNA |
1WSU |
13!E:35!E |
G:C |
WC [cWW][XIX] |
10.36 |
51.05; 53.99 |
2.94 |
-3.93 |
0.28 |
9.49 |
| mRNA |
1WSU |
14!E:34!E |
G:C |
WC [cWW][XIX] |
10.21 |
48.77; 56.53 |
7.76 |
-9.84 |
0.65 |
8.19 |
| mRNA |
1WSU |
15!E:33!E |
C:G |
WC [cWW][XIX] |
10.16 |
60.09; 51.43 |
8.66 |
-4.92 |
0.24 |
9.13 |
| mRNA |
1WSU |
16!E:32!E |
G:C |
WC [cWW][XIX] |
10.47 |
59.54; 52.81 |
6.72 |
-7.97 |
0.28 |
14.77 |
| mRNA |
1WSU |
17!E:31!E |
U:A |
H_1 [cWH][XXIII] |
10.08 |
59.81; 23.64 |
36.17 |
-4.24 |
0.27 |
16.16 |
| mRNA |
1WSU |
18!E:30!E |
U:A |
WC [cWW][XX] |
10.65 |
54.88; 54.69 |
0.18 |
-10.0 |
0.56 |
13.15 |
| mRNA |
1WSU |
19!E:29!E |
G:C |
WC [cWW][XIX] |
10.58 |
54.4; 54.76 |
0.36 |
-6.22 |
0.36 |
8.9 |
| mRNA |
1WSU |
20!E:28!E |
C:G |
WC [cWW][XIX] |
10.69 |
56.83; 53.81 |
3.02 |
-9.97 |
0.31 |
18.23 |
| mRNA |
1WSU |
21!E:27!E |
C:G |
WC [cWW][XIX] |
10.85 |
51.09; 50.42 |
0.68 |
-12.12 |
0.63 |
14.54 |
| mRNA |
1WSU |
22!E:25!E |
G:C |
WC [cWW][XIX] |
10.21 |
55.05; 60.61 |
5.56 |
8.53 |
0.27 |
20.79 |
| mRNA |
1WSU |
28!E:15!G |
G:C |
rS(ss:O2*-O2*) [---][-] |
5.51 |
157.37; 174.82 |
17.44 |
-86.17 |
1.01 |
20.77 |
| mRNA |
1WSU |
13!F:35!F |
G:C |
WC [cWW][XIX] |
10.07 |
50.2; 57.66 |
7.46 |
-4.66 |
0.1 |
7.12 |
| mRNA |
1WSU |
14!F:34!F |
G:C |
WC [cWW][XIX] |
10.25 |
48.37; 56.87 |
8.51 |
-7.59 |
0.19 |
10.73 |
| mRNA |
1WSU |
15!F:33!F |
C:G |
WC [cWW][XIX] |
10.59 |
50.9; 54.47 |
3.57 |
-3.46 |
0.03 |
10.49 |
| mRNA |
1WSU |
16!F:32!F |
G:C |
WC [cWW][XIX] |
10.51 |
58.31; 53.58 |
4.73 |
-12.86 |
0.63 |
18.77 |
| mRNA |
1WSU |
18!F:30!F |
U:A |
WC [cWW][XX] |
10.5 |
57.6; 56.53 |
1.07 |
-5.74 |
0.68 |
6.49 |
| mRNA |
1WSU |
19!F:29!F |
G:C |
WC [cWW][XIX] |
10.65 |
54.45; 54.77 |
0.32 |
-4.11 |
0.73 |
6.41 |
| mRNA |
1WSU |
20!F:28!F |
C:G |
WC [cWW][XIX] |
10.81 |
56.24; 55.32 |
0.92 |
-6.06 |
0.04 |
15.02 |
| mRNA |
1WSU |
21!F:27!F |
C:G |
WC [cWW][XIX] |
10.76 |
55.34; 55.57 |
0.23 |
-12.9 |
0.2 |
23.61 |
| mRNA |
1WSU |
22!F:25!F |
G:C |
WC [cWW][XIX] |
9.63 |
55.57; 69.78 |
14.21 |
11.4 |
1.57 |
32.89 |
| mRNA |
1WSU |
13!G:35!G |
G:C |
WC [cWW][XIX] |
10.78 |
51.8; 56.16 |
4.36 |
-11.09 |
0.05 |
21.84 |
| mRNA |
1WSU |
14!G:34!G |
G:C |
WC [cWW][XIX] |
10.59 |
54.43; 54.83 |
0.4 |
-4.64 |
0.62 |
19.91 |
| mRNA |
1WSU |
15!G:33!G |
C:G |
WC [cWW][XIX] |
10.48 |
62.26; 54.05 |
8.21 |
-7.52 |
0.71 |
8.47 |
| mRNA |
1WSU |
16!G:32!G |
G:C |
WC [cWW][XIX] |
10.76 |
62.21; 51.22 |
10.98 |
-6.21 |
0.61 |
9.22 |
| mRNA |
1WSU |
18!G:30!G |
U:A |
WC [cWW][XX] |
10.45 |
60.79; 59.96 |
0.83 |
-3.58 |
1.11 |
2.03 |
| mRNA |
1WSU |
19!G:29!G |
G:C |
WC [cWW][XIX] |
10.77 |
54.94; 51.38 |
3.56 |
-0.94 |
0.11 |
8.23 |
| mRNA |
1WSU |
20!G:28!G |
C:G |
WC [cWW][XIX] |
10.74 |
54.17; 52.62 |
1.55 |
-1.68 |
0.29 |
12.51 |
| mRNA |
1WSU |
21!G:27!G |
C:G |
WC [cWW][XIX] |
10.74 |
57.6; 53.32 |
4.28 |
-6.95 |
0.22 |
11.43 |