Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1WVD
BPC Identified: 22
Ambiguities: 0
vRNA |
1WVD |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.66 |
50.88; 49.78 |
1.1 |
-18.96 |
0.73 |
27.71 |
vRNA |
1WVD |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.06 |
56.52; 58.75 |
2.23 |
-14.74 |
0.0 |
16.68 |
vRNA |
1WVD |
3!A:21!B |
U:A |
WC [cWW][XX] |
9.94 |
60.77; 58.98 |
1.79 |
-3.69 |
0.17 |
15.54 |
vRNA |
1WVD |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.71 |
55.18; 55.32 |
0.14 |
-7.93 |
0.02 |
15.03 |
vRNA |
1WVD |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.58 |
58.46; 50.13 |
8.32 |
-17.93 |
0.02 |
23.4 |
vRNA |
1WVD |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.49 |
56.33; 51.98 |
4.35 |
-10.16 |
0.06 |
12.97 |
vRNA |
1WVD |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.6 |
53.83; 51.78 |
2.05 |
-3.78 |
0.21 |
15.21 |
vRNA |
1WVD |
9!A:16!B |
G:A |
WC [cWW][VIII] |
12.31 |
49.18; 51.4 |
2.23 |
-9.0 |
0.17 |
33.89 |
vRNA |
1WVD |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.5 |
55.7; 54.47 |
1.23 |
-8.33 |
0.43 |
14.87 |
vRNA |
1WVD |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.67 |
49.05; 57.92 |
8.87 |
-8.57 |
0.06 |
16.55 |
vRNA |
1WVD |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.5 |
50.66; 55.68 |
5.02 |
-3.7 |
0.35 |
11.1 |
vRNA |
1WVD |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.66 |
52.0; 53.44 |
1.44 |
-5.29 |
0.05 |
11.53 |
vRNA |
1WVD |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.24 |
57.28; 56.92 |
0.36 |
-5.51 |
0.33 |
16.37 |
vRNA |
1WVD |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.86 |
48.79; 53.78 |
4.98 |
-14.07 |
0.48 |
16.56 |
vRNA |
1WVD |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.59 |
46.67; 56.41 |
9.74 |
-5.87 |
0.06 |
21.29 |
vRNA |
1WVD |
17!A:7!B |
C:G |
WC [cWW][XIX] |
11.0 |
56.34; 49.7 |
6.63 |
2.93 |
0.81 |
14.21 |
vRNA |
1WVD |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.47 |
54.42; 56.5 |
2.08 |
-7.33 |
0.17 |
12.29 |
vRNA |
1WVD |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.49 |
52.95; 56.56 |
3.61 |
-15.59 |
0.41 |
24.31 |
vRNA |
1WVD |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.42 |
56.66; 54.57 |
2.09 |
-13.08 |
0.07 |
15.89 |
vRNA |
1WVD |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.07 |
60.8; 61.81 |
1.01 |
-10.46 |
0.01 |
13.53 |
vRNA |
1WVD |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.2 |
54.96; 56.77 |
1.81 |
-12.87 |
0.03 |
15.42 |
vRNA |
1WVD |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.48 |
51.09; 55.43 |
4.34 |
-13.92 |
0.07 |
18.87 |