Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1X9C BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 1X9C 2!A:13!B C:G WC [cWW][XIX] 10.59 58.01; 53.19 4.82 1.17 0.22 10.11
HP_ribozyme 1X9C 3!A:12!B C:G WC [cWW][XIX] 10.47 51.85; 56.9 5.04 -1.16 0.14 3.74
HP_ribozyme 1X9C 4!A:11!B C:G WC [cWW][XIX] 10.47 58.22; 55.65 2.57 4.68 0.15 5.3
HP_ribozyme 1X9C 5!A:9!B A:A S [tSH][-] 9.93 87.59; 4.69 82.91 -99.75 0.7 20.64
HP_ribozyme 1X9C 6!A:25!C G:C WC [cWW][XIX] 10.52 52.74; 54.31 1.57 -14.0 0.7 23.17
HP_ribozyme 1X9C 7!A:8!B U:G S*_1 [tHS][-] 10.93 17.16; 100.18 83.02 27.9 0.24 18.07
HP_ribozyme 1X9C 8!A:7!B C:A Wb* [cWW][-] 11.27 44.37; 68.95 24.58 -0.41 0.09 21.54
HP_ribozyme 1X9C 9!A:6!B C:G WC [cWW][XIX] 10.39 59.52; 57.83 1.7 -7.07 0.28 7.62
HP_ribozyme 1X9C 10!A:5!B A:U WC [cWW][XX] 10.26 56.8; 59.49 2.69 -4.62 0.05 7.24
HP_ribozyme 1X9C 11!A:4!B C:G WC [cWW][XIX] 10.52 60.41; 53.98 6.43 -2.92 0.24 8.26
HP_ribozyme 1X9C 12!A:3!B C:G WC [cWW][XIX] 10.24 62.44; 54.66 7.79 -9.07 0.21 13.11
HP_ribozyme 1X9C 13!A:2!B G:C WC [cWW][XIX] 10.26 58.5; 54.94 3.56 -2.99 0.1 7.65
HP_ribozyme 1X9C 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.44 92.77; 151.41 58.63 -68.94 0.31 45.99
HP_ribozyme 1X9C 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.43 151.04; 92.86 58.18 -66.01 1.35 47.39
HP_ribozyme 1X9C 15!C:49!D G:C WC [cWW][XIX] 10.77 52.49; 54.85 2.37 -10.96 0.29 8.09
HP_ribozyme 1X9C 16!C:48!D G:C WC [cWW][XIX] 10.64 49.4; 56.65 7.25 -9.84 0.24 15.82
HP_ribozyme 1X9C 17!C:47!D C:G WC [cWW][XIX] 10.51 56.76; 54.34 2.43 -8.58 0.25 14.6
HP_ribozyme 1X9C 18!C:46!D A:U WC [cWW][XX] 10.23 58.13; 58.4 0.26 -1.84 0.07 6.99
HP_ribozyme 1X9C 19!C:45!D G:C WC [cWW][XIX] 10.37 55.76; 58.78 3.02 -1.04 0.06 8.55
HP_ribozyme 1X9C 20!C:44!D A:C Wb* [cWW][-] 10.57 73.39; 51.02 22.36 0.89 0.05 16.29
HP_ribozyme 1X9C 21!C:43!D G:A S [tSH][XI] 9.54 96.37; 2.65 93.72 55.64 0.05 6.44
HP_ribozyme 1X9C 22!C:41!D A:U rH_1 [tWH][XXIV] 9.61 20.16; 31.29 11.13 -162.92 0.5 14.64
HP_ribozyme 1X9C 23!C:40!D A:A rH [tWH][V] 12.45 13.26; 25.79 12.53 172.77 0.6 20.82
HP_ribozyme 1X9C 24!C:38!D A:A rpS* [---][-] 11.7 2.07; 49.5 47.43 179.2 0.37 11.1
HP_ribozyme 1X9C 26!C:36!D A:G WC [cWW][VIII] 12.71 45.59; 45.89 0.3 -10.34 0.09 20.28
HP_ribozyme 1X9C 27!C:36!D C:G WC_Mo [cWW][XIX] 10.1 75.24; 59.15 16.09 -19.3 2.15 11.92
HP_ribozyme 1X9C 27!C:35!D C:G WC [cWW][XIX] 10.57 54.87; 55.2 0.33 -17.96 0.48 23.62
HP_ribozyme 1X9C 28!C:34!D A:U WC [cWW][XX] 10.33 53.62; 56.87 3.25 -14.52 0.0 18.75
HP_ribozyme 1X9C 29!C:33!D C:G WC [cWW][XIX] 10.53 55.74; 54.48 1.27 -9.48 0.21 15.73
HP_ribozyme 1X9C 30!C:32!D G:C WC [cWW][XIX] 10.8 52.35; 54.74 2.39 -9.7 0.29 13.71
HP_ribozyme 1X9C 31!C:31!D A:U WC [cWW][XX] 10.58 58.41; 51.2 7.21 -4.19 0.02 11.17