Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1X9K BPC Identified: 28 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 1X9K 3!A:13!B C:G WC [cWW][XIX] 10.42 57.69; 58.63 0.94 -24.44 0.0 31.84
HP_ribozyme 1X9K 4!A:12!B G:C WC [cWW][XIX] 10.17 55.52; 57.0 1.48 -11.89 0.69 24.41
HP_ribozyme 1X9K 5!A:11!B C:G WC [cWW][XIX] 10.49 53.39; 57.92 4.52 -2.88 0.93 17.53
HP_ribozyme 1X9K 6!A:9!B A:A S [tSH][-] 9.95 85.89; 5.37 80.51 178.28 2.42 49.39
HP_ribozyme 1X9K 7!A:25!C G:C WC [cWW][XIX] 10.87 48.42; 45.89 2.53 -13.76 0.39 12.48
HP_ribozyme 1X9K 8!A:8!B U:G S*_1 [tHS][-] 11.31 10.59; 97.03 86.44 26.46 0.37 16.5
HP_ribozyme 1X9K 9!A:7!B C:A Wb* [cWW][-] 11.46 48.17; 66.85 18.68 1.01 1.08 36.99
HP_ribozyme 1X9K 10!A:6!B C:G WC [cWW][XIX] 10.85 57.04; 54.37 2.66 3.18 0.06 13.69
HP_ribozyme 1X9K 11!A:5!B U:A WC [cWW][XX] 10.67 59.64; 46.56 13.09 -4.35 0.23 3.9
HP_ribozyme 1X9K 12!A:4!B A:U WC [cWW][XX] 10.75 51.73; 55.84 4.1 1.69 0.04 1.26
HP_ribozyme 1X9K 13!A:3!B U:A WC [cWW][XX] 10.5 57.12; 53.55 3.57 -3.85 0.62 16.65
HP_ribozyme 1X9K 14!A:2!B U:A WC [cWW][XX] 10.55 47.87; 53.12 5.25 -7.96 0.16 35.96
HP_ribozyme 1X9K 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.24 155.34; 99.18 56.15 -71.54 1.48 38.02
HP_ribozyme 1X9K 15!C:49!D G:C WC [cWW][XIX] 10.89 54.93; 56.38 1.44 -3.45 0.22 9.87
HP_ribozyme 1X9K 16!C:48!D G:C WC [cWW][XIX] 10.79 55.0; 51.63 3.37 -10.06 0.05 12.74
HP_ribozyme 1X9K 17!C:47!D C:G WC [cWW][XIX] 10.41 64.63; 58.24 6.39 -8.68 0.59 16.98
HP_ribozyme 1X9K 18!C:46!D A:U WC [cWW][XX] 10.35 58.33; 53.38 4.94 2.89 0.65 14.76
HP_ribozyme 1X9K 19!C:45!D G:C WC [cWW][XIX] 10.05 59.99; 56.39 3.6 -3.6 0.38 15.88
HP_ribozyme 1X9K 20!C:44!D A:C Wb* [cWW][-] 10.5 70.22; 49.89 20.33 -6.91 0.19 14.0
HP_ribozyme 1X9K 21!C:43!D G:A S [tSH][XI] 9.61 97.35; 3.96 93.39 0.95 0.46 12.16
HP_ribozyme 1X9K 22!C:41!D A:U rH_1 [tWH][XXIV] 9.71 21.31; 25.77 4.46 -148.4 0.04 17.54
HP_ribozyme 1X9K 23!C:40!D A:A rH [tWH][V] 12.88 14.06; 23.18 9.12 -170.12 0.6 19.49
HP_ribozyme 1X9K 24!C:38!D A:A rH_mo [tWH][V] 11.86 9.99; 43.77 33.77 129.36 0.27 8.98
HP_ribozyme 1X9K 27!C:35!D C:G WC [cWW][XIX] 11.16 51.56; 45.78 5.78 -14.95 0.4 16.08
HP_ribozyme 1X9K 28!C:34!D A:U WC [cWW][XX] 10.88 52.36; 54.77 2.41 -7.57 0.4 16.39
HP_ribozyme 1X9K 29!C:33!D C:G WC [cWW][XIX] 10.41 56.58; 59.86 3.28 -7.03 0.24 11.75
HP_ribozyme 1X9K 30!C:32!D G:C WC [cWW][XIX] 10.79 49.51; 59.4 9.89 4.48 0.29 14.19
HP_ribozyme 1X9K 31!C:31!D A:U Wb* [---][-] 10.79 62.74; 50.53 12.21 12.7 0.85 22.99