Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1XJR BPC Identified: 23 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
vRNA 1XJR 3!A:47!A A:U WC [cWW][XX] 10.46 53.39; 58.73 5.35 -7.55 0.19 11.02
vRNA 1XJR 4!A:46!A G:U Wb [cWW][XXVIII] 10.38 42.01; 69.72 27.71 -9.81 0.2 12.87
vRNA 1XJR 5!A:45!A U:A WC [cWW][XX] 10.58 50.92; 55.92 5.01 -17.07 0.13 21.84
vRNA 1XJR 6!A:44!A U:A WC [cWW][XX] 10.53 54.13; 56.1 1.98 -13.2 0.23 16.21
vRNA 1XJR 7!A:43!A C:G WC [cWW][XIX] 10.61 55.79; 53.38 2.41 -9.87 0.12 15.38
vRNA 1XJR 8!A:42!A A:U WC [cWW][XX] 10.42 57.27; 54.52 2.75 -13.09 0.17 14.93
vRNA 1XJR 9!A:41!A C:G WC [cWW][XIX] 10.65 56.92; 53.48 3.44 -9.59 0.09 13.53
vRNA 1XJR 10!A:40!A C:A sWb [---][-] 11.01 76.35; 22.97 53.39 3.98 0.2 10.42
vRNA 1XJR 11!A:33!A G:A pfS_1 [---][-] 5.78 137.23; 85.37 51.86 -19.67 1.12 48.64
vRNA 1XJR 13!A:39!A G:C WC [cWW][XIX] 10.75 53.26; 52.6 0.66 5.5 0.16 6.58
vRNA 1XJR 14!A:37!A G:U Wb [cWW][XXVIII] 10.48 38.36; 65.5 27.14 -10.11 0.1 19.28
vRNA 1XJR 15!A:36!A C:G WC [cWW][XIX] 10.58 51.68; 54.92 3.23 -15.3 0.56 22.94
vRNA 1XJR 16!A:35!A C:G WC [cWW][XIX] 10.53 53.92; 51.89 2.03 -12.3 0.07 13.54
vRNA 1XJR 17!A:34!A A:G WC [cWW][VIII] 12.0 56.1; 51.28 4.83 -10.77 0.12 31.59
vRNA 1XJR 18!A:32!A C:G WC [cWW][XIX] 10.79 54.87; 54.32 0.54 -9.67 0.17 15.57
vRNA 1XJR 19!A:31!A G:C WC [cWW][XIX] 10.86 51.99; 52.78 0.79 -6.39 0.47 18.41
vRNA 1XJR 19!A:20!A G:C rpS [cSS][-] 4.02 110.2; 151.86 41.66 85.09 1.25 27.38
vRNA 1XJR 20!A:28!A C:G WC [cWW][XIX] 10.74 52.44; 53.1 0.65 5.3 1.14 25.91
vRNA 1XJR 21!A:27!A G:C WC [cWW][XIX] 10.73 53.96; 53.8 0.16 2.54 0.53 12.75
vRNA 1XJR 22!A:26!A G:A S [tSH][XI] 9.16 106.08; 14.21 91.87 -51.54 0.49 23.09
vRNA 1XJR 22!A:24!A G:G S(sb:O2*-N7)_1 [---][-] 7.25 83.63; 34.34 49.29 -174.42 2.64 25.27
vRNA 1XJR 28!A:31!A G:C rpS [cSS][-] 4.16 109.79; 150.7 40.9 87.97 0.53 22.35
vRNA 1XJR 38!A:39!A A:C pS* [cHS][-] 6.87 139.91; 40.61 99.3 25.55 0.09 15.24