Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1XOK
BPC Identified: 13
Ambiguities: 0
| vRNA |
1XOK |
844!A:865!A |
U:A |
rWC [tWW][XXI] |
11.01 |
39.46; 26.02 |
13.44 |
177.5 |
0.41 |
15.24 |
| vRNA |
1XOK |
846!A:867!A |
C:G |
WC [cWW][XIX] |
10.51 |
54.74; 52.41 |
2.32 |
-1.1 |
0.09 |
22.55 |
| vRNA |
1XOK |
847!A:864!A |
U:A |
WC [cWW][XX] |
10.71 |
51.12; 51.62 |
0.49 |
-5.6 |
0.05 |
9.89 |
| vRNA |
1XOK |
848!A:863!A |
C:G |
WC [cWW][XIX] |
10.55 |
54.08; 47.92 |
6.16 |
-6.48 |
0.04 |
15.18 |
| vRNA |
1XOK |
849!A:862!A |
A:U |
WC [cWW][XX] |
10.4 |
55.55; 51.39 |
4.15 |
-12.24 |
0.17 |
21.49 |
| vRNA |
1XOK |
850!A:861!A |
U:A |
WC [cWW][XX] |
10.31 |
54.18; 53.86 |
0.32 |
-6.55 |
0.72 |
4.36 |
| vRNA |
1XOK |
851!A:860!A |
G:C |
WC [cWW][XIX] |
10.59 |
51.1; 53.53 |
2.43 |
-9.12 |
0.03 |
12.62 |
| vRNA |
1XOK |
866!A:878!B |
U:A |
rWC [tWW][XXI] |
11.08 |
42.11; 26.96 |
15.15 |
173.75 |
0.72 |
24.32 |
| vRNA |
1XOK |
868!A:880!B |
C:G |
WC [cWW][XIX] |
10.52 |
50.7; 57.95 |
7.25 |
2.31 |
0.68 |
28.02 |
| vRNA |
1XOK |
869!A:877!B |
C:G |
WC [cWW][XIX] |
10.6 |
51.37; 49.55 |
1.81 |
-3.76 |
0.25 |
15.7 |
| vRNA |
1XOK |
870!A:876!B |
C:G |
WC [cWW][XIX] |
10.53 |
56.14; 56.49 |
0.35 |
-3.03 |
0.19 |
7.15 |
| vRNA |
1XOK |
871!A:875!B |
C:G |
WC [cWW][XIX] |
10.34 |
61.95; 55.75 |
6.2 |
-12.63 |
0.01 |
28.71 |
| vRNA |
1XOK |
872!A:874!B |
U:A |
WC [cWW][XX] |
10.58 |
51.28; 57.02 |
5.74 |
-7.35 |
0.01 |
12.32 |