Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1Y0Q BPC Identified: 108 Ambiguities: 2
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 1Y0Q 9!A:4!B G:U Wb [cWW][XXVIII] 11.09 33.26; 54.86 21.6 4.44 1.21 10.93
Group_I_RNA 1Y0Q 10!A:3!B A:U WC [cWW][XX] 10.14 56.29; 59.21 2.92 13.86 0.15 21.81
Group_I_RNA 1Y0Q 11!A:2!B G:C WC [cWW][XIX] 10.63 55.56; 56.27 0.7 1.04 0.42 13.47
Group_I_RNA 1Y0Q 12!A:1!B C:G WC [cWW][XIX] 10.57 55.36; 52.11 3.25 -15.66 0.14 18.78
Group_I_RNA 1Y0Q 12!A:182!A C:G rpS [cSS][-] 6.2 130.93; 93.47 37.46 -88.48 0.18 54.46
Group_I_RNA 1Y0Q 13!A:34!A C:G Wb [---][-] 10.99 54.71; 45.65 9.07 -15.6 1.83 44.93
Group_I_RNA 1Y0Q 16!A:31!A U:A WC [cWW][XX] 10.12 58.45; 61.2 2.75 -2.64 0.43 16.45
Group_I_RNA 1Y0Q 17!A:30!A A:U WC [cWW][XX] 10.12 60.26; 58.2 2.06 0.76 0.73 19.41
Group_I_RNA 1Y0Q 18!A:29!A U:A WC [cWW][XX] 9.99 57.61; 60.65 3.04 -7.65 0.16 24.23
Group_I_RNA 1Y0Q 19!A:28!A A:U WC [cWW][XX] 9.64 60.61; 62.68 2.07 -6.81 0.84 12.3
Group_I_RNA 1Y0Q 20!A:27!A C:G WC [cWW][XIX] 10.67 53.41; 53.43 0.03 -12.03 0.58 9.93
Group_I_RNA 1Y0Q 21!A:26!A A:U WC [cWW][XX] 10.44 56.29; 58.05 1.76 -2.42 0.38 24.37
Group_I_RNA 1Y0Q 22!A:25!A G:A S_mo [tSH][XI] 9.55 95.55; 18.63 76.92 -109.66 0.62 24.61
Group_I_RNA 1Y0Q 22!A:24!A G:A S(sb:O2*-N7) [---][-] 6.95 91.66; 37.88 53.78 -164.39 2.08 38.09
Group_I_RNA 1Y0Q 24!A:171!A A:C rpS(sb:O2*-N3) [cSS][-] 5.71 88.8; 142.92 54.12 -65.62 0.31 31.65
Group_I_RNA 1Y0Q 25!A:178!A A:G rS [tSS][-] 8.48 63.25; 93.71 30.46 155.38 0.27 19.74
Group_I_RNA 1Y0Q 25!A:170!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.22 148.7; 107.65 41.05 -41.56 0.88 17.86
Group_I_RNA 1Y0Q 26!A:179!A U:G rS(ss:O2*-O2*)_2 [---][-] 5.4 167.44; 158.94 8.5 -108.0 0.15 21.67
Group_I_RNA 1Y0Q 39!A:166!A A:U WC [cWW][XX] 10.72 53.29; 53.34 0.05 6.43 0.37 3.09
Group_I_RNA 1Y0Q 40!A:165!A U:A WC [cWW][XX] 10.64 54.49; 55.59 1.1 -4.93 0.57 22.38
Group_I_RNA 1Y0Q 41!A:164!A C:G WC [cWW][XIX] 10.52 55.25; 56.34 1.09 -8.87 0.23 12.15
Group_I_RNA 1Y0Q 42!A:163!A C:G WC [cWW][XIX] 10.44 58.29; 58.63 0.34 -3.86 0.5 19.32
Group_I_RNA 1Y0Q 43!A:162!A U:G Wb [cWW][XXVIII] 10.29 71.61; 48.86 22.75 -2.13 0.32 4.33
Group_I_RNA 1Y0Q 44!A:161!A C:G WC [cWW][XIX] 10.43 57.85; 55.33 2.52 6.8 0.03 7.83
Group_I_RNA 1Y0Q 44!A:93!A C:A rpS(sb:O2*-N3) [cSS][-] 5.32 145.46; 90.03 55.43 -83.99 0.05 40.49
Group_I_RNA 1Y0Q 45!A:159!A U:A rH_1 [tWH][XXIV] 9.26 41.21; 17.35 23.86 -159.17 1.12 47.99
Group_I_RNA 1Y0Q 46!A:92!A A:U rpS(sb:O2*-N3) [cSS][-] 5.07 91.99; 153.93 61.93 -51.38 1.69 47.38
Group_I_RNA 1Y0Q 47!A:115!A A:G rS [tSS][-] 8.08 54.42; 88.78 34.36 156.85 0.06 18.12
Group_I_RNA 1Y0Q 47!A:91!A A:C rpS(bs:O2-O2*) [cSS][-] 5.85 145.02; 101.81 43.22 -38.61 0.65 11.43
Group_I_RNA 1Y0Q 49!A:89!A U:A WC [cWW][XX] 9.84 60.78; 57.51 3.26 -21.71 0.29 25.72
Group_I_RNA 1Y0Q 50!A:117!A C:G pS*(bs:N4-O2*) [---][-] 9.18 17.14; 149.95 132.82 35.57 0.13 16.02
Group_I_RNA 1Y0Q 50!A:88!A C:G WC [cWW][XIX] 10.46 57.64; 53.9 3.74 -13.97 0.24 19.57
Group_I_RNA 1Y0Q 51!A:87!A A:U WC [cWW][XX] 10.07 60.04; 59.18 0.86 -4.45 0.79 22.96
Group_I_RNA 1Y0Q 52!A:86!A G:C WC [cWW][XIX] 10.81 52.95; 53.23 0.28 0.0 0.25 7.65
Group_I_RNA 1Y0Q 53!A:85!A G:C WC [cWW][XIX] 10.28 57.08; 58.52 1.44 0.55 0.6 7.29
Group_I_RNA 1Y0Q 54!A:84!A G:U Wb_Mo [cWW][XXVIII] 10.08 57.12; 87.4 30.28 5.21 0.26 6.53
Group_I_RNA 1Y0Q 55!A:83!A A:A S [tSH][-] 9.65 96.2; 8.05 88.15 -24.72 0.33 19.72
Group_I_RNA 1Y0Q 56!A:82!A A:A S [tSH][-] 9.06 7.3; 94.71 87.41 16.41 0.2 3.92
Group_I_RNA 1Y0Q 60!A:208!A C:A rpS(bs:O2-O2*) [cSS][-] 5.89 104.75; 148.54 43.78 -67.91 1.35 20.94
Group_I_RNA 1Y0Q 60!A:79!A C:G WC [cWW][XIX] 9.89 54.57; 65.82 11.26 -15.74 0.13 27.88
Group_I_RNA 1Y0Q 61!A:78!A U:A WC [cWW][XX] 10.67 48.3; 47.12 1.19 -10.86 0.93 5.53
Group_I_RNA 1Y0Q 80!A:209!A G:C rS(ss:O2*-O2*) [---][-] 5.82 167.48; 169.56 2.07 -37.78 1.16 19.25
Group_I_RNA 1Y0Q 86!A:186!A C:U rpS* [---][-] 11.46 42.97; 25.57 17.4 27.69 0.63 29.39
Group_I_RNA 1Y0Q 87!A:118!A U:C rS* [tHH][-] 12.52 22.44; 11.72 10.71 -108.06 0.4 27.56
Group_I_RNA 1Y0Q 88!A:117!A G:G S_1 [tSH][-] 11.43 4.8; 90.12 85.32 -18.53 0.21 3.74
Group_I_RNA 1Y0Q 90!A:116!A G:U Wb [cWW][XXVIII] 10.61 38.58; 57.01 18.43 -27.21 0.59 29.51
Group_I_RNA 1Y0Q 91!A:115!A C:G WC [cWW][XIX] 10.43 52.22; 54.91 2.69 -17.01 0.08 24.67
Group_I_RNA 1Y0Q 94!A:162!A A:G rS [tSS][-] 8.45 49.71; 96.88 47.17 173.82 0.5 30.62
Group_I_RNA 1Y0Q 95!A:112!A G:A WC [cWW][VIII] 13.18 47.29; 38.8 8.49 1.96 0.43 31.73
Group_I_RNA 1Y0Q 96!A:111!A C:G WC [cWW][XIX] 11.02 50.61; 46.5 4.11 -13.08 0.34 14.74
Group_I_RNA 1Y0Q 97!A:110!A U:A WC [cWW][XX] 9.79 60.36; 62.74 2.38 -0.56 1.17 9.03
Group_I_RNA 1Y0Q 98!A:109!A C:G WC [cWW][XIX] 10.65 54.18; 57.6 3.41 -6.12 0.23 11.53
Group_I_RNA 1Y0Q 99!A:108!A U:A WC [cWW][XX] 10.67 52.87; 53.16 0.29 -5.51 0.2 12.88
Group_I_RNA 1Y0Q 100!A:107!A U:A WC [cWW][XX] 10.56 58.15; 56.09 2.06 -12.29 0.61 8.34
Group_I_RNA 1Y0Q 101!A:106!A A:U WC [cWW][XX] 10.11 55.42; 59.92 4.51 -6.3 0.31 13.38
Group_I_RNA 1Y0Q 102!A:105!A G:A S [tSH][XI] 9.57 88.14; 15.65 72.49 -116.52 1.54 6.43
Group_I_RNA 1Y0Q 102!A:104!A G:A S(sb:O2*-N7) [---][-] 6.97 82.53; 39.41 43.12 -165.8 1.54 23.97
Group_I_RNA 1Y0Q 119!A:123!A A:A rH [tWH][V] 11.52 20.08; 27.6 7.52 -136.71 0.25 23.41
Group_I_RNA 1Y0Q 120!A:193!A A:U WC [cWW][XX] 10.73 52.29; 53.4 1.11 -21.57 1.04 34.25
Group_I_RNA 1Y0Q 122!A:252!A G:G H_1 [cWH][VI] 11.29 26.56; 57.84 31.28 -9.18 0.55 8.4
Group_I_RNA 1Y0Q 122!A:192!A G:C WC [cWW][XIX] 10.75 52.81; 52.9 0.09 -7.04 0.02 7.52
Group_I_RNA 1Y0Q 123!A:191!A A:U WC [cWW][XX] 10.26 60.75; 53.87 6.88 -14.41 0.02 18.31
Group_I_RNA 1Y0Q 124!A:190!A C:G WC [cWW][XIX] 10.28 57.23; 56.54 0.68 -8.63 1.17 22.37
Group_I_RNA 1Y0Q 124!A:187!A C:A rH* [---][-] 12.96 6.55; 39.12 32.57 108.73 0.99 13.93
Group_I_RNA 1Y0Q 125!A:189!A U:A WC [cWW][XX] 10.64 56.92; 54.02 2.9 7.19 0.74 30.28
Group_I_RNA 1Y0Q 125!A:158!A U:A sWC [---][-] 11.02 69.23; 33.6 35.63 20.2 0.83 17.39
Group_I_RNA 1Y0Q 126!A:188!A A:U WC [cWW][XX] 11.78 49.11; 39.61 9.51 -44.16 0.59 39.88
Group_I_RNA 1Y0Q 127!A:138!A U:A WC [cWW][XX] 9.92 60.88; 59.12 1.76 -15.81 0.84 42.38
Group_I_RNA 1Y0Q 128!A:137!A U:A WC [cWW][XX] 10.18 60.27; 60.21 0.06 -7.52 0.29 18.39
Group_I_RNA 1Y0Q 129!A:136!A C:G WC [cWW][XIX] 10.7 54.88; 55.08 0.2 9.6 0.05 13.18
Group_I_RNA 1Y0Q 130!A:135!A C:G WC [cWW][XIX] 10.38 56.96; 55.72 1.25 13.35 0.49 21.95
Group_I_RNA 1Y0Q 131!A:134!A G:A S [tSH][XI] 10.0 83.48; 13.16 70.32 -141.64 1.69 36.36
Group_I_RNA 1Y0Q 139!A:157!A G:A S(bp:N2-O2P)_3 [---][-] 11.25 99.42; 53.69 45.73 -160.23 0.3 17.69
Group_I_RNA 1Y0Q 140!A:157!A U:A rH_1 [tWH][XXIV] 9.68 32.16; 20.12 12.04 -173.47 0.85 3.32
Group_I_RNA 1Y0Q 141!A:156!A A:G S [tSH][XI] 9.32 8.78; 105.22 96.44 -45.43 0.28 9.14
Group_I_RNA 1Y0Q 142!A:191!A* G:U rS(sb:O2*-N2) [---][-]; rpS(sb:O2*-N2) [---][-] 6.68 92.89; 114.29 21.4 -163.91 0.29 67.85
Group_I_RNA 1Y0Q 142!A:155!A G:C WC [cWW][XIX] 10.67 50.07; 50.57 0.5 -13.94 0.05 23.31
Group_I_RNA 1Y0Q 144!A:153!A G:C WC [cWW][XIX] 10.66 56.15; 54.45 1.7 -11.29 0.04 21.06
Group_I_RNA 1Y0Q 145!A:152!A U:A WC [cWW][XX] 10.11 59.23; 56.11 3.12 -2.45 0.9 14.3
Group_I_RNA 1Y0Q 146!A:151!A C:G WC [cWW][XIX] 10.85 51.67; 51.98 0.3 -2.82 0.08 8.2
Group_I_RNA 1Y0Q 149!A:230!A G:C WC [cWW][XIX] 10.57 49.84; 52.57 2.73 -12.88 0.13 28.19
Group_I_RNA 1Y0Q 150!A:229!A U:A WC [cWW][XX] 10.76 50.66; 58.67 8.01 -19.61 0.62 13.86
Group_I_RNA 1Y0Q 156!A:190!A G:G rpS(ss:O2*-O2*) [---][-] 6.25 173.67; 155.2 18.47 118.59 1.92 31.24
Group_I_RNA 1Y0Q 157!A:189!A A:A rpS(sb:O2*-N3) [cSS][-] 5.69 138.17; 94.13 44.04 -82.14 0.07 40.92
Group_I_RNA 1Y0Q 167!A:181!A U:A WC [cWW][XX] 10.14 55.12; 54.36 0.76 -12.25 0.08 13.81
Group_I_RNA 1Y0Q 168!A:180!A A:U WC [cWW][XX] 10.86 56.07; 51.41 4.65 -5.66 0.07 8.79
Group_I_RNA 1Y0Q 169!A:179!A C:G WC [cWW][XIX] 11.46 53.39; 53.02 0.37 3.71 0.07 13.84
Group_I_RNA 1Y0Q 170!A:178!A C:G WC [cWW][XIX] 10.83 56.24; 58.77 2.53 -4.68 0.22 4.98
Group_I_RNA 1Y0Q 171!A:177!A C:G Wb* [---][-] 11.13 50.67; 63.26 12.58 -10.97 0.92 26.64
Group_I_RNA 1Y0Q 182!A:2!B* G:C rS [tSS][-]; fS_2 [---][-] 8.36 44.48; 116.41 71.93 166.87 1.59 43.89
Group_I_RNA 1Y0Q 195!A:251!A A:U WC [cWW][XX] 10.74 57.64; 54.51 3.13 -14.06 0.26 14.6
Group_I_RNA 1Y0Q 196!A:250!A A:U WC [cWW][XX] 10.19 53.63; 59.21 5.57 -6.42 0.22 28.69
Group_I_RNA 1Y0Q 199!A:214!A U:A WC [cWW][XX] 10.06 52.84; 60.77 7.93 -15.49 1.92 51.9
Group_I_RNA 1Y0Q 200!A:213!A A:U WC [cWW][XX] 10.55 56.24; 50.73 5.51 -12.62 0.26 35.0
Group_I_RNA 1Y0Q 201!A:212!A U:A WC [cWW][XX] 10.34 57.86; 55.51 2.35 -13.78 0.34 15.5
Group_I_RNA 1Y0Q 202!A:211!A A:U WC [cWW][XX] 10.27 59.65; 57.65 2.0 -6.57 0.64 19.52
Group_I_RNA 1Y0Q 203!A:210!A U:A WC [cWW][XX] 10.34 58.11; 56.96 1.14 -10.9 0.08 25.84
Group_I_RNA 1Y0Q 204!A:209!A G:C WC [cWW][XIX] 10.5 56.37; 56.2 0.17 3.38 0.6 13.84
Group_I_RNA 1Y0Q 205!A:208!A G:A S [tSH][XI] 9.81 90.52; 17.74 72.78 -57.61 1.05 26.49
Group_I_RNA 1Y0Q 215!A:245!A G:C fS*_1 [tWS][-] 9.71 92.84; 14.53 78.31 99.78 0.45 28.51
Group_I_RNA 1Y0Q 218!A:240!A G:C WC [cWW][XIX] 10.85 50.21; 51.42 1.21 10.41 0.18 16.47
Group_I_RNA 1Y0Q 219!A:239!A G:C WC [cWW][XIX] 10.72 54.18; 52.01 2.17 -2.56 0.45 6.28
Group_I_RNA 1Y0Q 220!A:238!A A:U WC [cWW][XX] 10.28 54.28; 58.44 4.16 -13.39 0.61 11.26
Group_I_RNA 1Y0Q 221!A:237!A U:A WC [cWW][XX] 10.32 55.05; 57.69 2.64 -11.95 0.9 6.99
Group_I_RNA 1Y0Q 222!A:236!A A:U WC [cWW][XX] 10.88 50.74; 48.27 2.47 -17.19 0.59 18.1
Group_I_RNA 1Y0Q 223!A:235!A G:C WC [cWW][XIX] 10.32 55.64; 57.13 1.49 -17.66 0.45 15.14
Group_I_RNA 1Y0Q 224!A:234!A G:C WC [cWW][XIX] 10.37 51.91; 53.16 1.25 -14.82 1.14 33.34
Group_I_RNA 1Y0Q 225!A:233!A A:A Wb [cWW][-] 12.0 67.86; 39.09 28.78 -19.86 0.06 47.26