Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1Y6S
BPC Identified: 22
Ambiguities: 0
| vRNA |
1Y6S |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.86 |
54.07; 51.55 |
2.52 |
-12.02 |
0.98 |
24.72 |
| vRNA |
1Y6S |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.09 |
54.27; 60.26 |
5.99 |
0.32 |
0.06 |
12.32 |
| vRNA |
1Y6S |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.31 |
56.11; 61.37 |
5.26 |
-7.86 |
0.12 |
16.8 |
| vRNA |
1Y6S |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.32 |
48.47; 56.57 |
8.1 |
-6.77 |
0.21 |
29.18 |
| vRNA |
1Y6S |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.67 |
57.75; 54.83 |
2.92 |
-4.15 |
0.14 |
8.64 |
| vRNA |
1Y6S |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.56 |
52.13; 54.72 |
2.58 |
-2.6 |
0.47 |
10.51 |
| vRNA |
1Y6S |
7!A:17!B |
G:C |
Wb [---][-] |
10.48 |
50.57; 64.55 |
13.99 |
1.93 |
0.22 |
6.07 |
| vRNA |
1Y6S |
9!A:16!B |
G:A |
WC [cWW][VIII] |
11.99 |
55.81; 55.37 |
0.44 |
-6.05 |
0.08 |
25.88 |
| vRNA |
1Y6S |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.24 |
52.36; 58.33 |
5.97 |
-12.44 |
0.43 |
17.43 |
| vRNA |
1Y6S |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.24 |
55.48; 59.09 |
3.61 |
-4.26 |
0.11 |
7.21 |
| vRNA |
1Y6S |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.28 |
56.57; 57.54 |
0.97 |
-5.29 |
0.18 |
7.27 |
| vRNA |
1Y6S |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.38 |
51.06; 54.57 |
3.51 |
-5.23 |
0.21 |
13.45 |
| vRNA |
1Y6S |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.5 |
58.34; 52.1 |
6.25 |
-2.93 |
0.06 |
6.44 |
| vRNA |
1Y6S |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.48 |
49.24; 55.43 |
6.19 |
-5.76 |
0.06 |
11.18 |
| vRNA |
1Y6S |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.83 |
48.06; 56.29 |
8.23 |
-12.51 |
0.71 |
32.97 |
| vRNA |
1Y6S |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.47 |
51.24; 57.53 |
6.29 |
-2.2 |
0.0 |
5.28 |
| vRNA |
1Y6S |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.16 |
58.88; 58.24 |
0.64 |
-6.16 |
0.6 |
15.17 |
| vRNA |
1Y6S |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.26 |
45.78; 57.92 |
12.14 |
-5.57 |
0.03 |
10.87 |
| vRNA |
1Y6S |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.45 |
53.78; 59.09 |
5.3 |
-6.31 |
0.09 |
21.8 |
| vRNA |
1Y6S |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.19 |
61.57; 55.95 |
5.62 |
-5.61 |
0.1 |
11.78 |
| vRNA |
1Y6S |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.17 |
55.63; 55.19 |
0.44 |
-3.75 |
0.41 |
13.63 |
| vRNA |
1Y6S |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.65 |
56.24; 58.55 |
2.31 |
-7.95 |
0.7 |
23.65 |