Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1Y90
BPC Identified: 22
Ambiguities: 0
| vRNA |
1Y90 |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.65 |
50.34; 50.82 |
0.48 |
-12.41 |
0.34 |
18.17 |
| vRNA |
1Y90 |
2!A:22!B |
U:A |
WC [cWW][XX] |
9.99 |
53.07; 61.26 |
8.19 |
-16.64 |
0.12 |
23.12 |
| vRNA |
1Y90 |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.31 |
58.29; 57.05 |
1.24 |
-11.64 |
0.25 |
20.02 |
| vRNA |
1Y90 |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.6 |
53.31; 58.26 |
4.95 |
-8.1 |
0.26 |
13.93 |
| vRNA |
1Y90 |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.64 |
55.19; 51.2 |
3.99 |
-11.62 |
0.08 |
13.18 |
| vRNA |
1Y90 |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.52 |
53.11; 55.43 |
2.31 |
-8.18 |
0.26 |
15.0 |
| vRNA |
1Y90 |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.55 |
53.04; 55.88 |
2.84 |
-8.6 |
0.05 |
12.79 |
| vRNA |
1Y90 |
9!A:16!B |
G:A |
WC [cWW][VIII] |
12.3 |
53.85; 52.82 |
1.04 |
-4.73 |
0.53 |
31.34 |
| vRNA |
1Y90 |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.32 |
54.18; 58.15 |
3.97 |
-10.12 |
0.01 |
12.52 |
| vRNA |
1Y90 |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.64 |
51.76; 55.1 |
3.34 |
-5.87 |
0.04 |
7.05 |
| vRNA |
1Y90 |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.62 |
55.32; 54.56 |
0.76 |
-3.54 |
0.06 |
16.48 |
| vRNA |
1Y90 |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.73 |
56.52; 52.99 |
3.53 |
-9.03 |
0.25 |
11.52 |
| vRNA |
1Y90 |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.28 |
57.23; 55.24 |
1.99 |
-4.75 |
0.03 |
13.3 |
| vRNA |
1Y90 |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.58 |
55.4; 56.97 |
1.57 |
-10.83 |
0.0 |
12.72 |
| vRNA |
1Y90 |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.43 |
50.88; 57.39 |
6.51 |
-4.09 |
0.29 |
22.39 |
| vRNA |
1Y90 |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.58 |
50.86; 56.58 |
5.72 |
-7.13 |
0.68 |
7.11 |
| vRNA |
1Y90 |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.1 |
55.77; 59.46 |
3.69 |
-6.14 |
0.25 |
12.58 |
| vRNA |
1Y90 |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.48 |
51.89; 54.96 |
3.07 |
-10.63 |
0.38 |
15.49 |
| vRNA |
1Y90 |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.45 |
58.26; 53.85 |
4.41 |
-11.68 |
0.09 |
15.05 |
| vRNA |
1Y90 |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.39 |
54.64; 59.08 |
4.44 |
-11.18 |
0.3 |
13.78 |
| vRNA |
1Y90 |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.14 |
55.88; 56.9 |
1.02 |
-13.0 |
0.11 |
17.65 |
| vRNA |
1Y90 |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.47 |
53.81; 54.88 |
1.06 |
-7.52 |
0.05 |
11.53 |