Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1Y95
BPC Identified: 22
Ambiguities: 0
vRNA |
1Y95 |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.48 |
55.15; 49.85 |
5.3 |
-19.48 |
0.15 |
20.67 |
vRNA |
1Y95 |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.04 |
56.62; 57.57 |
0.95 |
-14.74 |
0.07 |
18.96 |
vRNA |
1Y95 |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.09 |
56.67; 58.73 |
2.06 |
-7.07 |
0.04 |
9.09 |
vRNA |
1Y95 |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.58 |
58.79; 57.67 |
1.12 |
-5.96 |
0.01 |
7.8 |
vRNA |
1Y95 |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.61 |
55.24; 49.84 |
5.4 |
-10.47 |
0.15 |
13.24 |
vRNA |
1Y95 |
6!A:18!B |
U:A |
WC [cWW][XX] |
10.57 |
53.64; 52.95 |
0.68 |
-11.2 |
0.21 |
17.35 |
vRNA |
1Y95 |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.68 |
55.37; 52.43 |
2.94 |
-4.39 |
0.01 |
8.09 |
vRNA |
1Y95 |
9!A:16!B |
G:A |
WC [cWW][VIII] |
12.07 |
56.43; 57.87 |
1.44 |
-3.08 |
0.23 |
23.98 |
vRNA |
1Y95 |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.57 |
54.84; 54.96 |
0.13 |
-8.73 |
0.57 |
18.99 |
vRNA |
1Y95 |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.09 |
57.83; 53.71 |
4.11 |
-6.75 |
0.09 |
9.78 |
vRNA |
1Y95 |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.38 |
55.22; 55.93 |
0.72 |
-13.48 |
0.2 |
24.22 |
vRNA |
1Y95 |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.66 |
53.22; 54.95 |
1.73 |
-10.3 |
0.25 |
12.61 |
vRNA |
1Y95 |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.11 |
56.33; 57.46 |
1.12 |
-11.2 |
0.09 |
19.94 |
vRNA |
1Y95 |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.69 |
50.11; 54.93 |
4.81 |
-11.79 |
0.34 |
11.07 |
vRNA |
1Y95 |
16!A:9!B |
A:G |
WC [cWW][VIII] |
12.54 |
49.84; 46.35 |
3.48 |
-2.22 |
0.18 |
20.15 |
vRNA |
1Y95 |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.7 |
57.1; 48.37 |
8.73 |
-1.13 |
0.37 |
8.51 |
vRNA |
1Y95 |
18!A:6!B |
A:U |
WC [cWW][XX] |
10.41 |
54.14; 57.74 |
3.6 |
-6.13 |
0.03 |
7.84 |
vRNA |
1Y95 |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.32 |
51.17; 55.84 |
4.67 |
-12.63 |
0.12 |
16.5 |
vRNA |
1Y95 |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.34 |
56.76; 56.29 |
0.47 |
-9.31 |
0.06 |
9.48 |
vRNA |
1Y95 |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.1 |
60.09; 59.65 |
0.44 |
-11.05 |
0.04 |
14.44 |
vRNA |
1Y95 |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.27 |
54.19; 55.88 |
1.69 |
-12.03 |
0.5 |
19.0 |
vRNA |
1Y95 |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.36 |
53.37; 56.45 |
3.09 |
-9.87 |
0.12 |
14.57 |