Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YKQ
BPC Identified: 47
Ambiguities: 0
| RNA_aptamer |
1YKQ |
101!A:215!B |
G:C |
Wb* [---][-] |
11.09 |
68.04; 45.35 |
22.69 |
-12.44 |
0.18 |
14.69 |
| RNA_aptamer |
1YKQ |
102!A:214!B |
G:C |
WC [cWW][XIX] |
10.64 |
50.96; 53.02 |
2.06 |
5.46 |
0.09 |
12.96 |
| RNA_aptamer |
1YKQ |
103!A:234!B |
A:U |
Wb [---][-] |
11.04 |
39.49; 57.52 |
18.03 |
-8.24 |
0.14 |
22.65 |
| RNA_aptamer |
1YKQ |
104!A:233!B |
G:C |
Wb [---][-] |
10.31 |
50.39; 60.76 |
10.37 |
-7.87 |
0.32 |
15.13 |
| RNA_aptamer |
1YKQ |
105!A:207!B |
C:G |
WC [cWW][XIX] |
10.94 |
41.31; 56.81 |
15.5 |
-17.22 |
0.6 |
28.92 |
| RNA_aptamer |
1YKQ |
106!A:206!B |
U:A |
WC [cWW][XX] |
10.24 |
54.48; 63.04 |
8.56 |
-12.14 |
0.83 |
7.53 |
| RNA_aptamer |
1YKQ |
107!A:205!B |
C:G |
WC [cWW][XIX] |
9.87 |
62.61; 59.08 |
3.53 |
-2.77 |
0.11 |
25.58 |
| RNA_aptamer |
1YKQ |
108!A:204!B |
G:C |
Wb* [---][-] |
12.03 |
51.87; 27.71 |
24.16 |
-21.03 |
0.52 |
15.16 |
| RNA_aptamer |
1YKQ |
109!A:203!B |
C:G |
WC [cWW][XIX] |
10.42 |
55.91; 60.03 |
4.12 |
-9.76 |
0.18 |
15.31 |
| RNA_aptamer |
1YKQ |
110!A:202!B |
C:G |
Wb [---][-] |
10.1 |
71.33; 57.01 |
14.32 |
-17.63 |
0.4 |
19.38 |
| RNA_aptamer |
1YKQ |
111!A:201!B |
C:G |
WC_mo [cWW][XIX] |
13.1 |
30.99; 35.64 |
4.64 |
-7.62 |
0.46 |
22.69 |
| RNA_aptamer |
1YKQ |
208!B:238!B |
G:C |
WC_Mo [cWW][XIX] |
10.75 |
53.43; 63.82 |
10.39 |
-4.87 |
0.43 |
9.81 |
| RNA_aptamer |
1YKQ |
209!B:237!B |
C:G |
WC [cWW][XIX] |
10.6 |
54.97; 52.05 |
2.92 |
-9.38 |
0.2 |
14.86 |
| RNA_aptamer |
1YKQ |
210!B:236!B |
C:G |
WC [cWW][XIX] |
10.18 |
54.62; 57.43 |
2.81 |
-19.21 |
0.1 |
28.0 |
| RNA_aptamer |
1YKQ |
211!B:235!B |
G:C |
WC [cWW][XIX] |
10.68 |
48.16; 56.22 |
8.05 |
-9.49 |
0.14 |
10.63 |
| RNA_aptamer |
1YKQ |
212!B:232!B |
U:A |
rH_1 [tWH][XXIV] |
9.68 |
31.05; 15.0 |
16.06 |
-162.71 |
0.03 |
5.39 |
| RNA_aptamer |
1YKQ |
214!B:231!B |
C:U |
S [tSH][-] |
9.71 |
16.56; 81.5 |
64.94 |
-164.56 |
0.17 |
23.78 |
| RNA_aptamer |
1YKQ |
216!B:229!B |
A:A |
Wb [cWW][-] |
13.82 |
34.81; 47.95 |
13.14 |
-4.71 |
0.45 |
18.22 |
| RNA_aptamer |
1YKQ |
217!B:228!B |
G:C |
WC [cWW][XIX] |
10.4 |
60.73; 53.88 |
6.85 |
-18.07 |
0.27 |
25.02 |
| RNA_aptamer |
1YKQ |
218!B:227!B |
C:G |
WC [cWW][XIX] |
10.54 |
48.66; 57.22 |
8.56 |
-18.21 |
0.15 |
27.03 |
| RNA_aptamer |
1YKQ |
219!B:226!B |
U:A |
WC [cWW][XX] |
10.42 |
52.38; 57.7 |
5.31 |
-5.2 |
0.3 |
5.73 |
| RNA_aptamer |
1YKQ |
220!B:225!B |
C:G |
Wb* [---][-] |
10.66 |
57.63; 66.71 |
9.09 |
-4.01 |
1.0 |
16.0 |
| RNA_aptamer |
1YKQ |
221!B:224!B |
U:G |
fS_1 [tSW][-] |
9.96 |
88.3; 30.1 |
58.2 |
-179.61 |
0.09 |
19.37 |
| RNA_aptamer |
1YKQ |
101!C:215!D |
G:C |
Wb* [---][-] |
10.92 |
70.61; 44.33 |
26.28 |
-13.98 |
0.16 |
25.04 |
| RNA_aptamer |
1YKQ |
102!C:214!D |
G:C |
WC [cWW][XIX] |
10.88 |
55.16; 49.87 |
5.3 |
-0.15 |
0.39 |
7.09 |
| RNA_aptamer |
1YKQ |
103!C:234!D |
A:U |
WC [cWW][XX] |
11.57 |
45.03; 47.68 |
2.65 |
2.25 |
0.59 |
42.61 |
| RNA_aptamer |
1YKQ |
104!C:233!D |
G:C |
Wb* [---][-] |
10.56 |
70.53; 51.04 |
19.49 |
-16.35 |
0.11 |
20.99 |
| RNA_aptamer |
1YKQ |
105!C:207!D |
C:G |
WC [cWW][XIX] |
10.73 |
53.34; 55.29 |
1.95 |
3.55 |
0.92 |
33.66 |
| RNA_aptamer |
1YKQ |
106!C:206!D |
U:A |
WC [cWW][XX] |
10.73 |
51.72; 55.11 |
3.39 |
-8.61 |
0.57 |
0.91 |
| RNA_aptamer |
1YKQ |
107!C:205!D |
C:G |
WC [cWW][XIX] |
9.97 |
56.91; 59.3 |
2.39 |
-7.78 |
0.64 |
21.65 |
| RNA_aptamer |
1YKQ |
108!C:204!D |
G:C |
WC [cWW][XIX] |
11.31 |
50.87; 39.1 |
11.77 |
-19.27 |
0.83 |
11.14 |
| RNA_aptamer |
1YKQ |
109!C:203!D |
C:G |
WC [cWW][XIX] |
10.55 |
45.79; 61.5 |
15.71 |
-9.46 |
0.08 |
16.59 |
| RNA_aptamer |
1YKQ |
110!C:202!D |
C:G |
Wb [---][-] |
10.47 |
63.95; 50.56 |
13.39 |
-13.52 |
0.7 |
11.54 |
| RNA_aptamer |
1YKQ |
111!C:201!D |
C:G |
WC [cWW][XIX] |
11.79 |
51.27; 51.48 |
0.21 |
-12.78 |
0.75 |
9.5 |
| RNA_aptamer |
1YKQ |
208!D:238!D |
G:C |
WC_Mo [cWW][XIX] |
10.8 |
52.86; 63.46 |
10.6 |
0.17 |
0.22 |
15.38 |
| RNA_aptamer |
1YKQ |
209!D:237!D |
C:G |
WC [cWW][XIX] |
10.55 |
49.38; 54.64 |
5.26 |
6.55 |
0.25 |
14.6 |
| RNA_aptamer |
1YKQ |
210!D:236!D |
C:G |
WC [cWW][XIX] |
10.47 |
55.44; 48.49 |
6.94 |
-2.05 |
0.03 |
9.61 |
| RNA_aptamer |
1YKQ |
211!D:235!D |
G:C |
WC [cWW][XIX] |
10.38 |
50.74; 58.47 |
7.73 |
-9.22 |
0.85 |
25.09 |
| RNA_aptamer |
1YKQ |
212!D:232!D |
U:A |
rH_1 [tWH][XXIV] |
9.66 |
32.44; 19.07 |
13.38 |
-175.76 |
0.02 |
17.37 |
| RNA_aptamer |
1YKQ |
214!D:231!D |
C:U |
S [tSH][-] |
9.6 |
18.06; 78.17 |
60.11 |
-157.39 |
1.35 |
28.42 |
| RNA_aptamer |
1YKQ |
216!D:229!D |
A:A |
Wb [cWW][-] |
13.45 |
29.2; 56.12 |
26.92 |
9.4 |
0.8 |
20.95 |
| RNA_aptamer |
1YKQ |
217!D:228!D |
G:C |
WC [cWW][XIX] |
10.29 |
52.74; 58.96 |
6.22 |
-8.9 |
0.07 |
14.22 |
| RNA_aptamer |
1YKQ |
218!D:227!D |
C:G |
Wb* [---][-] |
11.35 |
39.06; 58.46 |
19.4 |
-9.88 |
0.04 |
13.32 |
| RNA_aptamer |
1YKQ |
219!D:226!D |
U:A |
WC [cWW][XX] |
10.32 |
56.66; 55.72 |
0.94 |
-1.63 |
0.29 |
1.43 |
| RNA_aptamer |
1YKQ |
220!D:225!D |
C:G |
Wb* [---][-] |
10.84 |
50.06; 65.42 |
15.36 |
6.51 |
0.35 |
1.89 |
| RNA_aptamer |
1YKQ |
221!D:224!D |
U:G |
fS_1 [tSW][-] |
10.54 |
85.42; 27.18 |
58.24 |
166.39 |
0.11 |
23.42 |
| RNA_aptamer |
1YKQ |
222!D:224!D |
U:G |
S(sb:O2*-N7)_2 [---][-] |
8.9 |
119.42; 24.3 |
95.12 |
21.02 |
0.66 |
50.35 |