Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1YKV BPC Identified: 46 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
RNA_aptamer 1YKV 101!A:215!B G:C WC [cWW][XIX] 10.64 63.24; 49.19 14.05 -2.03 0.07 9.07
RNA_aptamer 1YKV 102!A:214!B G:C WC [cWW][XIX] 10.82 53.46; 52.01 1.45 -5.97 0.33 11.23
RNA_aptamer 1YKV 103!A:234!B A:U WC [cWW][XX] 10.6 53.73; 52.77 0.96 1.54 0.28 11.95
RNA_aptamer 1YKV 104!A:233!B G:C WC [cWW][XIX] 10.48 54.73; 58.6 3.88 -7.86 0.37 13.35
RNA_aptamer 1YKV 105!A:207!B C:G WC [cWW][XIX] 10.69 49.75; 55.7 5.95 -4.92 0.14 7.73
RNA_aptamer 1YKV 106!A:206!B U:A WC [cWW][XX] 10.06 55.4; 62.15 6.76 -8.18 0.11 11.82
RNA_aptamer 1YKV 107!A:205!B C:G WC [cWW][XIX] 10.4 55.94; 59.95 4.0 -8.35 0.39 18.32
RNA_aptamer 1YKV 108!A:204!B G:C WC [cWW][XIX] 11.52 46.79; 37.34 9.45 -12.59 0.2 13.18
RNA_aptamer 1YKV 109!A:203!B C:G WC [cWW][XIX] 10.52 52.41; 55.08 2.67 -12.22 0.58 11.51
RNA_aptamer 1YKV 110!A:202!B C:G WC [cWW][XIX] 10.59 54.77; 53.04 1.73 -13.7 0.04 17.45
RNA_aptamer 1YKV 111!A:201!B C:G WC [cWW][XIX] 10.99 51.54; 52.07 0.53 -12.39 0.54 7.65
RNA_aptamer 1YKV 208!B:238!B G:C WC [cWW][XIX] 10.79 51.54; 54.95 3.42 -10.51 0.54 15.78
RNA_aptamer 1YKV 209!B:237!B C:G WC [cWW][XIX] 10.42 53.47; 56.78 3.31 -3.26 0.12 27.61
RNA_aptamer 1YKV 210!B:236!B C:G WC [cWW][XIX] 10.64 51.87; 56.12 4.25 -2.65 0.05 7.6
RNA_aptamer 1YKV 211!B:235!B G:C WC [cWW][XIX] 10.55 50.05; 57.32 7.27 -14.79 0.25 19.71
RNA_aptamer 1YKV 212!B:232!B U:A rH_1 [tWH][XXIV] 9.93 33.93; 17.26 16.66 174.67 0.19 9.6
RNA_aptamer 1YKV 214!B:231!B C:U S [tSH][-] 9.51 15.41; 77.44 62.04 -142.76 0.26 26.05
RNA_aptamer 1YKV 216!B:229!B A:A Wb [cWW][-] 14.25 28.48; 39.59 11.11 8.42 0.88 20.57
RNA_aptamer 1YKV 217!B:228!B G:C WC [cWW][XIX] 10.85 52.28; 52.95 0.67 -10.62 0.57 21.61
RNA_aptamer 1YKV 218!B:227!B C:G WC [cWW][XIX] 10.45 54.78; 57.09 2.31 -10.06 0.62 22.24
RNA_aptamer 1YKV 219!B:226!B U:A WC [cWW][XX] 10.29 58.62; 58.23 0.38 -5.1 0.2 9.2
RNA_aptamer 1YKV 220!B:225!B C:G WC [cWW][XIX] 10.68 56.18; 52.9 3.27 -3.29 0.0 8.19
RNA_aptamer 1YKV 221!B:224!B U:G fS_2 [---][-] 10.35 93.88; 38.03 55.85 163.43 0.3 18.0
RNA_aptamer 1YKV 101!C:215!D G:C WC [cWW][XIX] 10.79 60.88; 48.13 12.75 -4.81 0.43 13.36
RNA_aptamer 1YKV 102!C:214!D G:C WC [cWW][XIX] 10.59 58.07; 53.09 4.98 -4.75 0.17 6.15
RNA_aptamer 1YKV 103!C:234!D A:U WC [cWW][XX] 10.64 50.78; 52.59 1.8 4.14 0.35 21.29
RNA_aptamer 1YKV 104!C:233!D G:C WC [cWW][XIX] 10.88 54.4; 49.84 4.56 -0.85 0.32 9.04
RNA_aptamer 1YKV 105!C:207!D C:G WC [cWW][XIX] 10.62 52.98; 53.3 0.32 -8.38 0.08 18.69
RNA_aptamer 1YKV 106!C:206!D U:A WC [cWW][XX] 10.2 57.45; 60.27 2.82 -7.27 0.08 12.93
RNA_aptamer 1YKV 107!C:205!D C:G WC [cWW][XIX] 10.66 48.26; 57.85 9.59 -8.58 0.45 10.89
RNA_aptamer 1YKV 108!C:204!D G:C WC [cWW][XIX] 11.09 50.56; 50.39 0.17 -6.63 0.13 7.39
RNA_aptamer 1YKV 109!C:203!D C:G WC [cWW][XIX] 10.7 51.21; 56.11 4.9 -8.57 0.23 7.58
RNA_aptamer 1YKV 110!C:202!D C:G WC [cWW][XIX] 10.56 54.63; 55.09 0.46 -10.25 0.08 13.12
RNA_aptamer 1YKV 111!C:201!D C:G WC [cWW][XIX] 10.9 52.85; 51.25 1.6 -11.83 0.33 13.3
RNA_aptamer 1YKV 208!D:238!D G:C WC [cWW][XIX] 10.75 52.9; 54.18 1.28 -6.23 0.12 9.66
RNA_aptamer 1YKV 209!D:237!D C:G WC [cWW][XIX] 10.45 55.51; 55.97 0.46 0.29 0.31 20.94
RNA_aptamer 1YKV 210!D:236!D C:G WC [cWW][XIX] 10.43 58.34; 60.59 2.25 3.0 0.44 10.7
RNA_aptamer 1YKV 211!D:235!D G:C WC [cWW][XIX] 10.92 51.54; 56.35 4.81 -12.64 0.12 17.26
RNA_aptamer 1YKV 212!D:232!D U:A rH_1 [tWH][XXIV] 9.88 31.1; 24.58 6.52 -173.16 0.41 9.06
RNA_aptamer 1YKV 214!D:231!D C:U S [tSH][-] 9.42 16.44; 80.8 64.36 -139.26 0.26 19.56
RNA_aptamer 1YKV 216!D:229!D A:A Wb [cWW][-] 14.09 25.68; 41.07 15.39 1.19 0.56 21.09
RNA_aptamer 1YKV 217!D:228!D G:C WC [cWW][XIX] 10.81 57.05; 49.37 7.67 -9.79 0.5 17.85
RNA_aptamer 1YKV 218!D:227!D C:G WC [cWW][XIX] 10.26 55.52; 56.78 1.27 -8.64 0.2 17.57
RNA_aptamer 1YKV 219!D:226!D U:A WC [cWW][XX] 10.43 54.35; 55.64 1.29 1.86 0.1 6.47
RNA_aptamer 1YKV 220!D:225!D C:G WC [cWW][XIX] 10.49 58.68; 62.15 3.47 2.86 0.31 8.95
RNA_aptamer 1YKV 221!D:224!D U:G fS_1 [tSW][-] 10.25 95.79; 25.77 70.02 165.23 0.08 10.05