Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YKV
BPC Identified: 46
Ambiguities: 0
| RNA_aptamer |
1YKV |
101!A:215!B |
G:C |
WC [cWW][XIX] |
10.64 |
63.24; 49.19 |
14.05 |
-2.03 |
0.07 |
9.07 |
| RNA_aptamer |
1YKV |
102!A:214!B |
G:C |
WC [cWW][XIX] |
10.82 |
53.46; 52.01 |
1.45 |
-5.97 |
0.33 |
11.23 |
| RNA_aptamer |
1YKV |
103!A:234!B |
A:U |
WC [cWW][XX] |
10.6 |
53.73; 52.77 |
0.96 |
1.54 |
0.28 |
11.95 |
| RNA_aptamer |
1YKV |
104!A:233!B |
G:C |
WC [cWW][XIX] |
10.48 |
54.73; 58.6 |
3.88 |
-7.86 |
0.37 |
13.35 |
| RNA_aptamer |
1YKV |
105!A:207!B |
C:G |
WC [cWW][XIX] |
10.69 |
49.75; 55.7 |
5.95 |
-4.92 |
0.14 |
7.73 |
| RNA_aptamer |
1YKV |
106!A:206!B |
U:A |
WC [cWW][XX] |
10.06 |
55.4; 62.15 |
6.76 |
-8.18 |
0.11 |
11.82 |
| RNA_aptamer |
1YKV |
107!A:205!B |
C:G |
WC [cWW][XIX] |
10.4 |
55.94; 59.95 |
4.0 |
-8.35 |
0.39 |
18.32 |
| RNA_aptamer |
1YKV |
108!A:204!B |
G:C |
WC [cWW][XIX] |
11.52 |
46.79; 37.34 |
9.45 |
-12.59 |
0.2 |
13.18 |
| RNA_aptamer |
1YKV |
109!A:203!B |
C:G |
WC [cWW][XIX] |
10.52 |
52.41; 55.08 |
2.67 |
-12.22 |
0.58 |
11.51 |
| RNA_aptamer |
1YKV |
110!A:202!B |
C:G |
WC [cWW][XIX] |
10.59 |
54.77; 53.04 |
1.73 |
-13.7 |
0.04 |
17.45 |
| RNA_aptamer |
1YKV |
111!A:201!B |
C:G |
WC [cWW][XIX] |
10.99 |
51.54; 52.07 |
0.53 |
-12.39 |
0.54 |
7.65 |
| RNA_aptamer |
1YKV |
208!B:238!B |
G:C |
WC [cWW][XIX] |
10.79 |
51.54; 54.95 |
3.42 |
-10.51 |
0.54 |
15.78 |
| RNA_aptamer |
1YKV |
209!B:237!B |
C:G |
WC [cWW][XIX] |
10.42 |
53.47; 56.78 |
3.31 |
-3.26 |
0.12 |
27.61 |
| RNA_aptamer |
1YKV |
210!B:236!B |
C:G |
WC [cWW][XIX] |
10.64 |
51.87; 56.12 |
4.25 |
-2.65 |
0.05 |
7.6 |
| RNA_aptamer |
1YKV |
211!B:235!B |
G:C |
WC [cWW][XIX] |
10.55 |
50.05; 57.32 |
7.27 |
-14.79 |
0.25 |
19.71 |
| RNA_aptamer |
1YKV |
212!B:232!B |
U:A |
rH_1 [tWH][XXIV] |
9.93 |
33.93; 17.26 |
16.66 |
174.67 |
0.19 |
9.6 |
| RNA_aptamer |
1YKV |
214!B:231!B |
C:U |
S [tSH][-] |
9.51 |
15.41; 77.44 |
62.04 |
-142.76 |
0.26 |
26.05 |
| RNA_aptamer |
1YKV |
216!B:229!B |
A:A |
Wb [cWW][-] |
14.25 |
28.48; 39.59 |
11.11 |
8.42 |
0.88 |
20.57 |
| RNA_aptamer |
1YKV |
217!B:228!B |
G:C |
WC [cWW][XIX] |
10.85 |
52.28; 52.95 |
0.67 |
-10.62 |
0.57 |
21.61 |
| RNA_aptamer |
1YKV |
218!B:227!B |
C:G |
WC [cWW][XIX] |
10.45 |
54.78; 57.09 |
2.31 |
-10.06 |
0.62 |
22.24 |
| RNA_aptamer |
1YKV |
219!B:226!B |
U:A |
WC [cWW][XX] |
10.29 |
58.62; 58.23 |
0.38 |
-5.1 |
0.2 |
9.2 |
| RNA_aptamer |
1YKV |
220!B:225!B |
C:G |
WC [cWW][XIX] |
10.68 |
56.18; 52.9 |
3.27 |
-3.29 |
0.0 |
8.19 |
| RNA_aptamer |
1YKV |
221!B:224!B |
U:G |
fS_2 [---][-] |
10.35 |
93.88; 38.03 |
55.85 |
163.43 |
0.3 |
18.0 |
| RNA_aptamer |
1YKV |
101!C:215!D |
G:C |
WC [cWW][XIX] |
10.79 |
60.88; 48.13 |
12.75 |
-4.81 |
0.43 |
13.36 |
| RNA_aptamer |
1YKV |
102!C:214!D |
G:C |
WC [cWW][XIX] |
10.59 |
58.07; 53.09 |
4.98 |
-4.75 |
0.17 |
6.15 |
| RNA_aptamer |
1YKV |
103!C:234!D |
A:U |
WC [cWW][XX] |
10.64 |
50.78; 52.59 |
1.8 |
4.14 |
0.35 |
21.29 |
| RNA_aptamer |
1YKV |
104!C:233!D |
G:C |
WC [cWW][XIX] |
10.88 |
54.4; 49.84 |
4.56 |
-0.85 |
0.32 |
9.04 |
| RNA_aptamer |
1YKV |
105!C:207!D |
C:G |
WC [cWW][XIX] |
10.62 |
52.98; 53.3 |
0.32 |
-8.38 |
0.08 |
18.69 |
| RNA_aptamer |
1YKV |
106!C:206!D |
U:A |
WC [cWW][XX] |
10.2 |
57.45; 60.27 |
2.82 |
-7.27 |
0.08 |
12.93 |
| RNA_aptamer |
1YKV |
107!C:205!D |
C:G |
WC [cWW][XIX] |
10.66 |
48.26; 57.85 |
9.59 |
-8.58 |
0.45 |
10.89 |
| RNA_aptamer |
1YKV |
108!C:204!D |
G:C |
WC [cWW][XIX] |
11.09 |
50.56; 50.39 |
0.17 |
-6.63 |
0.13 |
7.39 |
| RNA_aptamer |
1YKV |
109!C:203!D |
C:G |
WC [cWW][XIX] |
10.7 |
51.21; 56.11 |
4.9 |
-8.57 |
0.23 |
7.58 |
| RNA_aptamer |
1YKV |
110!C:202!D |
C:G |
WC [cWW][XIX] |
10.56 |
54.63; 55.09 |
0.46 |
-10.25 |
0.08 |
13.12 |
| RNA_aptamer |
1YKV |
111!C:201!D |
C:G |
WC [cWW][XIX] |
10.9 |
52.85; 51.25 |
1.6 |
-11.83 |
0.33 |
13.3 |
| RNA_aptamer |
1YKV |
208!D:238!D |
G:C |
WC [cWW][XIX] |
10.75 |
52.9; 54.18 |
1.28 |
-6.23 |
0.12 |
9.66 |
| RNA_aptamer |
1YKV |
209!D:237!D |
C:G |
WC [cWW][XIX] |
10.45 |
55.51; 55.97 |
0.46 |
0.29 |
0.31 |
20.94 |
| RNA_aptamer |
1YKV |
210!D:236!D |
C:G |
WC [cWW][XIX] |
10.43 |
58.34; 60.59 |
2.25 |
3.0 |
0.44 |
10.7 |
| RNA_aptamer |
1YKV |
211!D:235!D |
G:C |
WC [cWW][XIX] |
10.92 |
51.54; 56.35 |
4.81 |
-12.64 |
0.12 |
17.26 |
| RNA_aptamer |
1YKV |
212!D:232!D |
U:A |
rH_1 [tWH][XXIV] |
9.88 |
31.1; 24.58 |
6.52 |
-173.16 |
0.41 |
9.06 |
| RNA_aptamer |
1YKV |
214!D:231!D |
C:U |
S [tSH][-] |
9.42 |
16.44; 80.8 |
64.36 |
-139.26 |
0.26 |
19.56 |
| RNA_aptamer |
1YKV |
216!D:229!D |
A:A |
Wb [cWW][-] |
14.09 |
25.68; 41.07 |
15.39 |
1.19 |
0.56 |
21.09 |
| RNA_aptamer |
1YKV |
217!D:228!D |
G:C |
WC [cWW][XIX] |
10.81 |
57.05; 49.37 |
7.67 |
-9.79 |
0.5 |
17.85 |
| RNA_aptamer |
1YKV |
218!D:227!D |
C:G |
WC [cWW][XIX] |
10.26 |
55.52; 56.78 |
1.27 |
-8.64 |
0.2 |
17.57 |
| RNA_aptamer |
1YKV |
219!D:226!D |
U:A |
WC [cWW][XX] |
10.43 |
54.35; 55.64 |
1.29 |
1.86 |
0.1 |
6.47 |
| RNA_aptamer |
1YKV |
220!D:225!D |
C:G |
WC [cWW][XIX] |
10.49 |
58.68; 62.15 |
3.47 |
2.86 |
0.31 |
8.95 |
| RNA_aptamer |
1YKV |
221!D:224!D |
U:G |
fS_1 [tSW][-] |
10.25 |
95.79; 25.77 |
70.02 |
165.23 |
0.08 |
10.05 |