Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YLS
BPC Identified: 46
Ambiguities: 0
| RNA_aptamer |
1YLS |
101!A:215!B |
G:C |
WC [cWW][XIX] |
10.43 |
57.75; 56.68 |
1.07 |
-4.77 |
0.55 |
6.16 |
| RNA_aptamer |
1YLS |
102!A:214!B |
G:C |
WC [cWW][XIX] |
10.81 |
52.2; 53.41 |
1.21 |
-8.79 |
0.3 |
20.05 |
| RNA_aptamer |
1YLS |
103!A:234!B |
A:U |
WC [cWW][XX] |
10.74 |
52.87; 53.17 |
0.3 |
0.86 |
0.25 |
11.31 |
| RNA_aptamer |
1YLS |
104!A:233!B |
G:C |
WC [cWW][XIX] |
10.63 |
57.64; 53.86 |
3.77 |
-3.24 |
0.28 |
9.9 |
| RNA_aptamer |
1YLS |
105!A:207!B |
C:G |
WC [cWW][XIX] |
10.52 |
56.51; 56.62 |
0.11 |
-4.93 |
0.01 |
9.82 |
| RNA_aptamer |
1YLS |
106!A:206!B |
U:A |
WC [cWW][XX] |
10.5 |
52.77; 58.96 |
6.19 |
-5.72 |
0.11 |
13.88 |
| RNA_aptamer |
1YLS |
107!A:205!B |
C:G |
WC [cWW][XIX] |
10.4 |
57.33; 62.1 |
4.77 |
-3.35 |
0.16 |
20.64 |
| RNA_aptamer |
1YLS |
108!A:204!B |
G:C |
WC [cWW][XIX] |
11.13 |
50.71; 46.97 |
3.74 |
-7.0 |
0.02 |
15.26 |
| RNA_aptamer |
1YLS |
109!A:203!B |
C:G |
WC [cWW][XIX] |
10.96 |
47.54; 54.22 |
6.68 |
-4.14 |
0.02 |
17.73 |
| RNA_aptamer |
1YLS |
110!A:202!B |
C:G |
WC [cWW][XIX] |
10.82 |
51.44; 52.68 |
1.25 |
-21.53 |
0.54 |
28.46 |
| RNA_aptamer |
1YLS |
111!A:201!B |
C:G |
WC [cWW][XIX] |
10.88 |
50.86; 58.44 |
7.59 |
-12.75 |
0.15 |
13.23 |
| RNA_aptamer |
1YLS |
208!B:238!B |
G:C |
WC [cWW][XIX] |
10.64 |
50.27; 51.04 |
0.77 |
-11.75 |
0.11 |
14.15 |
| RNA_aptamer |
1YLS |
209!B:237!B |
C:G |
WC [cWW][XIX] |
10.5 |
52.81; 52.96 |
0.15 |
-4.96 |
0.21 |
17.23 |
| RNA_aptamer |
1YLS |
210!B:236!B |
C:G |
WC [cWW][XIX] |
10.82 |
52.03; 52.14 |
0.1 |
-2.66 |
0.1 |
7.6 |
| RNA_aptamer |
1YLS |
211!B:235!B |
G:C |
WC [cWW][XIX] |
10.59 |
57.66; 52.08 |
5.59 |
-11.24 |
0.17 |
11.66 |
| RNA_aptamer |
1YLS |
212!B:232!B |
U:A |
rH_1 [tWH][XXIV] |
9.83 |
28.77; 21.76 |
7.01 |
178.0 |
0.28 |
2.56 |
| RNA_aptamer |
1YLS |
214!B:231!B |
C:U |
S [tSH][-] |
9.66 |
11.14; 82.7 |
71.56 |
-143.61 |
0.15 |
12.57 |
| RNA_aptamer |
1YLS |
216!B:229!B |
G:A |
WC [cWW][VIII] |
12.88 |
45.86; 47.4 |
1.54 |
-1.72 |
0.86 |
21.56 |
| RNA_aptamer |
1YLS |
217!B:228!B |
G:C |
WC [cWW][XIX] |
10.81 |
52.1; 51.09 |
1.01 |
-13.71 |
0.54 |
20.05 |
| RNA_aptamer |
1YLS |
218!B:227!B |
C:G |
WC [cWW][XIX] |
10.47 |
55.42; 54.91 |
0.52 |
-15.51 |
0.08 |
27.87 |
| RNA_aptamer |
1YLS |
219!B:226!B |
U:A |
WC [cWW][XX] |
10.63 |
53.64; 55.3 |
1.66 |
-8.13 |
1.29 |
3.31 |
| RNA_aptamer |
1YLS |
220!B:225!B |
C:G |
WC [cWW][XIX] |
10.75 |
58.35; 49.09 |
9.25 |
-7.57 |
0.39 |
8.03 |
| RNA_aptamer |
1YLS |
221!B:224!B |
U:G |
fS_1 [tSW][-] |
9.91 |
99.53; 28.49 |
71.04 |
173.09 |
0.17 |
13.57 |
| RNA_aptamer |
1YLS |
235!B:235!D |
C:C |
rpS(ss:O2*-O2*) [---][-] |
5.42 |
164.82; 174.3 |
9.48 |
-73.05 |
0.96 |
75.53 |
| RNA_aptamer |
1YLS |
101!C:215!D |
G:C |
WC [cWW][XIX] |
10.5 |
59.43; 57.52 |
1.91 |
2.84 |
0.22 |
10.71 |
| RNA_aptamer |
1YLS |
102!C:214!D |
G:C |
WC [cWW][XIX] |
10.86 |
54.13; 52.96 |
1.17 |
-7.45 |
0.66 |
18.8 |
| RNA_aptamer |
1YLS |
103!C:234!D |
A:U |
WC [cWW][XX] |
10.68 |
52.9; 56.22 |
3.32 |
2.33 |
0.19 |
19.67 |
| RNA_aptamer |
1YLS |
104!C:233!D |
G:C |
WC [cWW][XIX] |
10.79 |
52.47; 54.94 |
2.48 |
-4.14 |
0.17 |
2.65 |
| RNA_aptamer |
1YLS |
105!C:207!D |
C:G |
WC [cWW][XIX] |
10.68 |
52.91; 51.61 |
1.3 |
-9.46 |
0.29 |
10.29 |
| RNA_aptamer |
1YLS |
106!C:206!D |
U:A |
WC [cWW][XX] |
10.41 |
52.52; 58.45 |
5.93 |
-10.48 |
0.17 |
26.29 |
| RNA_aptamer |
1YLS |
107!C:205!D |
C:G |
WC [cWW][XIX] |
10.62 |
50.38; 60.36 |
9.98 |
-9.96 |
0.06 |
23.58 |
| RNA_aptamer |
1YLS |
108!C:204!D |
G:C |
WC [cWW][XIX] |
11.72 |
47.26; 43.93 |
3.32 |
-8.78 |
0.35 |
11.71 |
| RNA_aptamer |
1YLS |
109!C:203!D |
C:G |
WC [cWW][XIX] |
10.69 |
55.45; 49.09 |
6.36 |
-16.55 |
0.42 |
22.45 |
| RNA_aptamer |
1YLS |
110!C:202!D |
C:G |
WC [cWW][XIX] |
10.83 |
55.81; 49.43 |
6.38 |
-13.29 |
0.3 |
15.78 |
| RNA_aptamer |
1YLS |
111!C:201!D |
C:G |
WC [cWW][XIX] |
11.1 |
50.65; 51.17 |
0.53 |
-11.78 |
0.07 |
12.57 |
| RNA_aptamer |
1YLS |
208!D:238!D |
G:C |
WC [cWW][XIX] |
10.76 |
52.94; 52.51 |
0.43 |
-9.2 |
0.07 |
12.26 |
| RNA_aptamer |
1YLS |
209!D:237!D |
C:G |
WC [cWW][XIX] |
10.78 |
51.27; 52.73 |
1.47 |
-3.96 |
0.25 |
22.6 |
| RNA_aptamer |
1YLS |
210!D:236!D |
C:G |
WC [cWW][XIX] |
10.66 |
53.21; 52.94 |
0.27 |
1.12 |
0.42 |
7.17 |
| RNA_aptamer |
1YLS |
211!D:235!D |
G:C |
WC [cWW][XIX] |
10.55 |
56.49; 57.84 |
1.35 |
-10.17 |
0.15 |
12.55 |
| RNA_aptamer |
1YLS |
212!D:232!D |
U:A |
rH_1 [tWH][XXIV] |
9.88 |
32.25; 19.12 |
13.13 |
-174.55 |
0.23 |
7.15 |
| RNA_aptamer |
1YLS |
214!D:231!D |
C:U |
S [tSH][-] |
9.67 |
11.07; 82.18 |
71.11 |
-121.12 |
0.75 |
20.89 |
| RNA_aptamer |
1YLS |
217!D:228!D |
G:C |
WC [cWW][XIX] |
10.72 |
54.73; 54.07 |
0.66 |
-13.28 |
0.41 |
13.28 |
| RNA_aptamer |
1YLS |
218!D:227!D |
C:G |
WC [cWW][XIX] |
10.62 |
54.18; 53.52 |
0.66 |
-13.28 |
0.42 |
12.86 |
| RNA_aptamer |
1YLS |
219!D:226!D |
U:A |
WC [cWW][XX] |
10.9 |
48.43; 52.58 |
4.15 |
-2.87 |
0.03 |
6.64 |
| RNA_aptamer |
1YLS |
220!D:225!D |
C:G |
WC [cWW][XIX] |
10.67 |
60.23; 56.72 |
3.5 |
1.7 |
0.23 |
5.14 |
| RNA_aptamer |
1YLS |
221!D:224!D |
U:G |
fS_1 [tSW][-] |
10.0 |
99.75; 25.73 |
74.02 |
177.86 |
0.91 |
17.41 |