Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1YSH BPC Identified: 79 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
rRNA 1YSH 794!A:819!A U:A WC [cWW][XX] 10.62 64.34; 50.01 14.32 -0.52 0.54 14.46
rRNA 1YSH 795!A:818!A G:A S [tSH][XI] 8.36 108.52; 18.91 89.61 -65.41 0.84 21.12
rRNA 1YSH 796!A:817!A A:G S [tSH][XI] 8.59 3.59; 105.81 102.23 -54.13 0.86 25.21
rRNA 1YSH 797!A:816!A A:G S [tSH][XI] 9.58 9.11; 99.42 90.31 17.91 0.07 8.85
rRNA 1YSH 798!A:815!A G:U Wb [cWW][XXVIII] 10.22 39.75; 70.25 30.5 -7.08 0.43 17.59
rRNA 1YSH 799!A:1599!F C:U rS(ps:O1P-O2*) [---][-] 7.28 146.49; 122.18 24.31 128.48 2.53 29.53
rRNA 1YSH 799!A:814!A C:G WC [cWW][XIX] 10.69 53.32; 55.04 1.73 -3.02 0.07 10.02
rRNA 1YSH 800!A:813!A G:C WC [cWW][XIX] 10.61 50.83; 56.41 5.58 -8.6 0.2 16.79
rRNA 1YSH 801!A:812!A U:A WC [cWW][XX] 10.55 56.53; 53.66 2.86 -7.97 0.11 12.16
rRNA 1YSH 802!A:811!A G:C WC [cWW][XIX] 10.33 57.26; 55.85 1.41 -4.1 0.04 6.62
rRNA 1YSH 803!A:810!A C:G WC [cWW][XIX] 10.43 61.04; 55.02 6.02 -6.48 0.03 16.1
rRNA 1YSH 804!A:809!A C:G WC [cWW][XIX] 10.38 59.75; 48.58 11.18 3.98 0.11 8.29
rRNA 1YSH 805!A:808!A G:A S [tSH][XI] 8.26 100.79; 16.87 83.93 -61.99 1.18 18.1
rRNA 1YSH 805!A:807!A G:A S(sb:O2*-N7) [---][-] 7.35 94.74; 25.95 68.79 -169.12 0.87 34.97
rRNA 1YSH 816!A:1597!F G:A rpS(ps:O1P-O2*) [---][-] 9.33 106.91; 103.35 3.56 -159.46 1.47 34.61
rRNA 1YSH 1583!F:1612!F U:A WC [cWW][XX] 10.47 57.02; 56.5 0.53 -1.7 0.21 12.2
rRNA 1YSH 1584!F:1611!F C:G WC [cWW][XIX] 10.38 60.84; 51.54 9.29 0.07 0.37 8.03
rRNA 1YSH 1585!F:1610!F C:G WC [cWW][XIX] 10.6 51.5; 59.73 8.23 -0.77 0.2 10.83
rRNA 1YSH 1586!F:1609!F G:C WC [cWW][XIX] 10.33 54.94; 57.15 2.21 -1.6 0.27 19.01
rRNA 1YSH 1587!F:1608!F U:G Wb [cWW][XXVIII] 10.42 69.63; 38.55 31.09 -3.45 0.02 9.13
rRNA 1YSH 1588!F:1607!F G:A S [tSH][XI] 9.68 102.34; 9.53 92.81 28.75 0.44 6.64
rRNA 1YSH 1589!F:1606!F G:A S [tSH][XI] 9.32 101.2; 8.57 92.63 -89.33 1.51 39.24
rRNA 1YSH 1590!F:1602!F A:C fS(sb:O2*-N1)_1 [tSS][-] 8.51 53.09; 105.68 52.59 138.01 0.58 39.8
rRNA 1YSH 1592!F:1602!F G:C WC [cWW][XIX] 10.63 52.34; 57.22 4.88 10.54 0.13 8.12
rRNA 1YSH 1593!F:1601!F C:G WC [cWW][XIX] 10.7 59.36; 53.11 6.25 -5.98 0.28 21.57
rRNA 1YSH 1594!F:1600!F C:G WC [cWW][XIX] 10.94 54.56; 50.03 4.53 3.74 0.11 8.34
rRNA 1YSH 1596!F:1599!F U:U S(bp:N3-O2P) [---][-] 8.12 82.11; 27.98 54.13 -115.85 0.54 47.93
rRNA 1YSH 1596!F:1598!F U:A S(sb:O2*-N7) [---][-] 6.73 83.98; 36.9 47.08 -165.73 0.32 52.26
rRNA 1YSH 654!B:752!B G:G S_1 [tSH][-] 10.85 16.45; 95.0 78.54 -6.96 0.41 16.59
rRNA 1YSH 655!B:751!B A:U WC [cWW][XX] 10.58 55.21; 53.86 1.34 -0.29 0.26 12.2
rRNA 1YSH 656!B:750!B C:G WC [cWW][XIX] 10.48 60.3; 52.66 7.64 -0.37 0.99 24.39
rRNA 1YSH 657!B:749!B G:C WC [cWW][XIX] 10.58 56.8; 53.48 3.32 16.5 0.28 12.4
rRNA 1YSH 658!B:747!B G:C WC [cWW][XIX] 10.81 50.66; 54.34 3.68 -6.49 0.14 6.32
rRNA 1YSH 659!B:746!B U:A WC [cWW][XX] 10.59 53.8; 55.45 1.65 -9.92 0.19 21.75
rRNA 1YSH 660!B:745!B G:C WC [cWW][XIX] 10.59 52.21; 55.34 3.13 -8.38 0.04 11.14
rRNA 1YSH 661!B:744!B G:C WC [cWW][XIX] 10.66 52.94; 53.72 0.78 -5.44 0.35 13.44
rRNA 1YSH 662!B:743!B G:U Wb [cWW][XXVIII] 10.35 42.46; 68.55 26.1 -0.91 0.4 11.37
rRNA 1YSH 663!B:742!B A:G WC [cWW][VIII] 12.82 46.14; 43.84 2.3 5.26 0.02 2.24
rRNA 1YSH 664!B:741!B G:G Wb [---][-] 12.92 50.64; 32.2 18.44 17.69 0.07 14.92
rRNA 1YSH 664!B:726!B G:C rpS(sb:O2*-N2)_1 [---][-] 5.41 114.72; 137.05 22.33 -173.31 0.05 43.33
rRNA 1YSH 664!B:725!B G:G rpS(ss:O2*-O2*) [---][-] 5.85 172.88; 132.45 40.43 80.32 2.39 47.09
rRNA 1YSH 665!B:724!B A:G H_1 [cWH][IX] 11.21 37.13; 45.62 8.49 7.67 0.29 11.27
rRNA 1YSH 666!B:740!B G:U Wb [cWW][XXVIII] 10.17 41.53; 71.34 29.81 9.92 0.07 9.84
rRNA 1YSH 666!B:725!B G:G rpS(bp:N2-O2P) [---][-] 10.84 100.84; 85.44 15.4 -157.21 1.84 35.24
rRNA 1YSH 667!B:739!B G:C WC [cWW][XIX] 10.52 55.02; 57.47 2.45 -4.16 0.24 7.96
rRNA 1YSH 667!B:732!B G:C rS(sp:O2*-O1P) [---][-] 9.4 87.6; 145.42 57.83 108.17 1.93 41.75
rRNA 1YSH 668!B:738!B G:C WC [cWW][XIX] 10.58 56.45; 54.0 2.45 -5.44 0.54 22.91
rRNA 1YSH 669!B:737!B U:A WC [cWW][XX] 10.7 51.77; 53.61 1.84 0.84 0.03 4.23
rRNA 1YSH 670!B:736!B G:C WC [cWW][XIX] 10.49 51.26; 56.51 5.26 -1.79 0.14 5.4
rRNA 1YSH 671!B:735!B G:C WC [cWW][XIX] 10.53 56.36; 56.08 0.29 -14.68 0.38 20.48
rRNA 1YSH 672!B:734!B U:G Wb [cWW][XXVIII] 10.2 70.54; 43.94 26.6 -11.23 0.22 12.99
rRNA 1YSH 673!B:717!B G:C WC [cWW][XIX] 10.62 51.54; 55.18 3.63 -9.57 0.56 20.19
rRNA 1YSH 674!B:716!B G:A WC [cWW][VIII] 12.62 45.97; 46.51 0.54 -10.95 0.09 18.42
rRNA 1YSH 675!B:715!B A:A Wb [cWW][-] 13.29 31.06; 51.9 20.84 -8.12 0.09 16.22
rRNA 1YSH 676!B:714!B A:G WC [cWW][VIII] 12.74 47.57; 46.32 1.25 -11.23 0.42 23.6
rRNA 1YSH 677!B:713!B U:G Wb* [---][-] 11.54 38.02; 56.97 18.96 -7.29 0.16 14.94
rRNA 1YSH 678!B:712!B U:A WC [cWW][XX] 10.96 49.34; 55.02 5.68 -13.1 0.12 15.95
rRNA 1YSH 679!B:711!B C:G WC [cWW][XIX] 10.52 52.37; 54.26 1.89 -10.58 0.79 27.97
rRNA 1YSH 680!B:710!B C:G WC [cWW][XIX] 10.34 57.11; 54.71 2.4 -4.66 0.44 13.48
rRNA 1YSH 681!B:709!B C:G WC [cWW][XIX] 10.27 59.15; 52.9 6.25 -3.31 0.14 11.44
rRNA 1YSH 682!B:708!B G:C WC [cWW][XIX] 10.35 53.85; 57.11 3.27 0.82 0.04 4.69
rRNA 1YSH 683!B:707!B G:C WC [cWW][XIX] 10.59 55.64; 59.68 4.04 -2.6 0.02 4.34
rRNA 1YSH 684!B:706!B A:A Wb [cWW][-] 12.26 71.29; 41.97 29.32 1.28 0.46 29.45
rRNA 1YSH 685!B:705!B G:U S*_1 [tHS][-] 11.05 90.76; 6.91 83.85 72.43 0.44 24.2
rRNA 1YSH 685!B:704!B G:A S(bp:N1-O2P)_2 [---][-] 11.62 64.55; 35.21 29.34 139.83 1.68 19.43
rRNA 1YSH 686!B:704!B U:A rH_1 [tWH][XXIV] 9.86 38.51; 14.55 23.96 -149.37 0.88 6.82
rRNA 1YSH 686!B:703!B U:G S*(bs:O4-O2*) [---][-] 7.97 15.55; 92.09 76.54 134.38 1.15 51.7
rRNA 1YSH 687!B:703!B A:G S [tSH][XI] 9.27 5.82; 95.78 89.95 -11.62 1.58 46.42
rRNA 1YSH 687!B:700!B A:G rS [tSS][-] 8.41 50.95; 93.2 42.25 131.63 1.2 53.5
rRNA 1YSH 688!B:704!B G:A rS [tSS][-] 7.88 90.44; 46.4 44.04 -162.06 0.8 52.86
rRNA 1YSH 688!B:699!B G:C WC [cWW][XIX] 10.33 51.12; 57.09 5.97 -7.3 0.11 15.94
rRNA 1YSH 689!B:698!B C:G WC [cWW][XIX] 10.65 49.39; 55.48 6.09 -14.49 0.23 16.02
rRNA 1YSH 690!B:697!B G:U S*_1 [tHS][-] 11.23 86.14; 9.2 76.94 74.24 0.0 24.89
rRNA 1YSH 691!B:696!B G:A S [tSH][XI] 9.18 98.73; 1.95 96.78 -34.57 0.11 4.47
rRNA 1YSH 692!B:694!B U:A S(sb:O2*-N7) [---][-] 6.18 89.87; 39.46 50.41 -154.24 0.6 49.88
rRNA 1YSH 722!B:733!B A:A rWb* [tWW][I] 13.23 28.84; 35.04 6.2 -171.06 0.11 11.48
rRNA 1YSH 725!B:732!B G:C WC [cWW][XIX] 10.62 53.42; 55.76 2.34 1.96 0.03 3.6
rRNA 1YSH 726!B:731!B C:G WC [cWW][XIX] 10.56 52.75; 55.44 2.69 0.66 0.19 3.74
rRNA 1YSH 727!B:730!B G:G S_2_mo [---][-] 10.28 79.43; 21.49 57.94 -126.85 1.1 37.35