Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YVP
BPC Identified: 14
Ambiguities: 0
| Y_RNA |
1YVP |
1!C:9!D |
G:C |
WC [cWW][XIX] |
10.47 |
51.48; 56.33 |
4.86 |
-5.37 |
0.19 |
12.22 |
| Y_RNA |
1YVP |
2!C:8!D |
C:G |
WC [cWW][XIX] |
10.4 |
59.72; 57.83 |
1.89 |
-5.85 |
0.02 |
9.48 |
| Y_RNA |
1YVP |
3!C:7!D |
U:A |
WC [cWW][XX] |
10.39 |
57.27; 57.9 |
0.63 |
-2.18 |
0.26 |
8.33 |
| Y_RNA |
1YVP |
4!C:6!D |
G:U |
Wb [cWW][XXVIII] |
10.4 |
39.89; 69.74 |
29.85 |
-10.25 |
0.28 |
15.22 |
| Y_RNA |
1YVP |
5!C:5!D |
G:C |
WC [cWW][XIX] |
10.48 |
57.28; 54.32 |
2.96 |
-12.36 |
0.22 |
17.68 |
| Y_RNA |
1YVP |
6!C:4!D |
U:A |
WC [cWW][XX] |
10.68 |
51.96; 53.88 |
1.92 |
-7.73 |
0.08 |
11.83 |
| Y_RNA |
1YVP |
7!C:3!D |
C:G |
WC [cWW][XIX] |
10.69 |
53.13; 52.51 |
0.61 |
-10.61 |
0.1 |
8.98 |
| Y_RNA |
1YVP |
1!E:9!F |
G:C |
WC [cWW][XIX] |
10.51 |
52.93; 52.9 |
0.03 |
-4.42 |
0.31 |
10.62 |
| Y_RNA |
1YVP |
2!E:8!F |
C:G |
WC [cWW][XIX] |
10.51 |
56.22; 51.94 |
4.28 |
-6.87 |
0.05 |
10.05 |
| Y_RNA |
1YVP |
3!E:7!F |
U:A |
WC [cWW][XX] |
10.46 |
60.69; 56.23 |
4.47 |
-2.35 |
0.53 |
10.86 |
| Y_RNA |
1YVP |
4!E:6!F |
G:U |
Wb [cWW][XXVIII] |
10.28 |
39.53; 72.05 |
32.53 |
-12.44 |
0.01 |
15.57 |
| Y_RNA |
1YVP |
5!E:5!F |
G:C |
WC [cWW][XIX] |
10.39 |
55.49; 58.13 |
2.64 |
-14.58 |
0.09 |
18.05 |
| Y_RNA |
1YVP |
6!E:4!F |
U:A |
WC [cWW][XX] |
10.72 |
53.59; 52.33 |
1.27 |
-7.01 |
0.17 |
13.26 |
| Y_RNA |
1YVP |
7!E:3!F |
C:G |
WC [cWW][XIX] |
10.52 |
55.49; 53.43 |
2.06 |
-9.7 |
0.0 |
11.15 |