Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YYK
BPC Identified: 24
Ambiguities: 0
| dsRNA |
1YYK |
1!C:24!D |
C:G |
WC [cWW][XIX] |
10.78 |
45.48; 53.48 |
7.99 |
-12.28 |
0.21 |
16.11 |
| dsRNA |
1YYK |
2!C:23!D |
G:C |
WC [cWW][XIX] |
10.56 |
51.86; 61.76 |
9.91 |
-7.76 |
0.1 |
11.64 |
| dsRNA |
1YYK |
3!C:22!D |
C:G |
WC [cWW][XIX] |
10.47 |
53.69; 57.81 |
4.12 |
-5.96 |
0.0 |
10.01 |
| dsRNA |
1YYK |
4!C:21!D |
G:C |
WC [cWW][XIX] |
10.58 |
57.18; 61.04 |
3.86 |
-3.63 |
0.12 |
4.38 |
| dsRNA |
1YYK |
5!C:20!D |
A:U |
WC [cWW][XX] |
10.58 |
54.9; 51.67 |
3.23 |
-7.71 |
0.02 |
11.99 |
| dsRNA |
1YYK |
6!C:19!D |
A:U |
WC [cWW][XX] |
10.43 |
54.32; 53.52 |
0.8 |
-8.9 |
0.08 |
11.26 |
| dsRNA |
1YYK |
7!C:18!D |
U:A |
WC [cWW][XX] |
10.22 |
56.71; 52.94 |
3.77 |
-11.56 |
0.12 |
16.63 |
| dsRNA |
1YYK |
8!C:17!D |
U:A |
WC [cWW][XX] |
10.37 |
56.2; 54.59 |
1.61 |
-6.93 |
0.07 |
6.86 |
| dsRNA |
1YYK |
9!C:16!D |
C:G |
WC [cWW][XIX] |
10.59 |
54.95; 53.62 |
1.33 |
-1.62 |
0.2 |
6.94 |
| dsRNA |
1YYK |
10!C:15!D |
G:C |
WC [cWW][XIX] |
10.71 |
56.8; 51.93 |
4.87 |
-8.41 |
0.03 |
10.51 |
| dsRNA |
1YYK |
11!C:14!D |
C:G |
WC [cWW][XIX] |
10.52 |
53.91; 54.88 |
0.96 |
-11.88 |
0.41 |
18.69 |
| dsRNA |
1YYK |
12!C:13!D |
G:C |
WC [cWW][XIX] |
10.75 |
55.35; 47.66 |
7.69 |
-13.64 |
0.22 |
13.88 |
| dsRNA |
1YYK |
1!E:24!F |
C:G |
WC [cWW][XIX] |
10.77 |
50.2; 53.08 |
2.88 |
-8.2 |
0.06 |
9.51 |
| dsRNA |
1YYK |
2!E:23!F |
G:C |
WC [cWW][XIX] |
10.62 |
54.2; 53.75 |
0.45 |
-5.76 |
0.15 |
10.08 |
| dsRNA |
1YYK |
3!E:22!F |
C:G |
WC [cWW][XIX] |
10.68 |
54.84; 53.88 |
0.96 |
-7.51 |
0.28 |
12.5 |
| dsRNA |
1YYK |
4!E:21!F |
G:C |
WC [cWW][XIX] |
10.79 |
55.03; 52.24 |
2.79 |
-3.79 |
0.3 |
16.27 |
| dsRNA |
1YYK |
5!E:20!F |
A:U |
WC [cWW][XX] |
10.49 |
53.22; 53.46 |
0.25 |
-1.76 |
0.23 |
6.28 |
| dsRNA |
1YYK |
6!E:19!F |
A:U |
WC [cWW][XX] |
10.42 |
52.82; 58.54 |
5.72 |
-6.94 |
0.14 |
12.1 |
| dsRNA |
1YYK |
7!E:18!F |
U:A |
WC [cWW][XX] |
10.42 |
59.45; 56.19 |
3.26 |
-7.42 |
0.16 |
12.86 |
| dsRNA |
1YYK |
8!E:17!F |
U:A |
WC [cWW][XX] |
10.35 |
58.33; 51.9 |
6.44 |
-4.01 |
0.57 |
16.34 |
| dsRNA |
1YYK |
9!E:16!F |
C:G |
WC [cWW][XIX] |
10.82 |
58.23; 58.27 |
0.04 |
-2.82 |
0.25 |
8.91 |
| dsRNA |
1YYK |
10!E:15!F |
G:C |
WC [cWW][XIX] |
10.49 |
48.12; 52.31 |
4.19 |
-14.32 |
0.23 |
17.22 |
| dsRNA |
1YYK |
11!E:14!F |
C:G |
WC [cWW][XIX] |
10.17 |
60.43; 49.9 |
10.53 |
-16.0 |
0.09 |
17.87 |
| dsRNA |
1YYK |
12!E:13!F |
G:C |
WC [cWW][XIX] |
10.35 |
52.57; 56.3 |
3.73 |
-15.44 |
0.1 |
14.49 |