Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1YYO
BPC Identified: 24
Ambiguities: 0
| dsRNA |
1YYO |
1!C:24!D |
C:G |
WC [cWW][XIX] |
10.8 |
45.7; 60.51 |
14.81 |
-12.08 |
0.01 |
15.54 |
| dsRNA |
1YYO |
2!C:23!D |
G:C |
WC [cWW][XIX] |
10.63 |
53.76; 57.07 |
3.31 |
-7.4 |
0.08 |
11.49 |
| dsRNA |
1YYO |
3!C:22!D |
C:G |
WC [cWW][XIX] |
10.52 |
50.93; 60.98 |
10.05 |
-9.68 |
0.26 |
11.13 |
| dsRNA |
1YYO |
4!C:21!D |
G:C |
WC [cWW][XIX] |
10.53 |
55.79; 64.42 |
8.63 |
-6.42 |
0.05 |
9.0 |
| dsRNA |
1YYO |
5!C:20!D |
A:U |
WC [cWW][XX] |
10.24 |
56.59; 57.16 |
0.57 |
-8.29 |
0.3 |
9.12 |
| dsRNA |
1YYO |
6!C:19!D |
A:U |
WC [cWW][XX] |
10.52 |
52.15; 54.23 |
2.08 |
-5.83 |
0.16 |
9.11 |
| dsRNA |
1YYO |
7!C:18!D |
U:A |
WC [cWW][XX] |
10.2 |
63.77; 54.35 |
9.43 |
-6.15 |
0.16 |
11.08 |
| dsRNA |
1YYO |
8!C:17!D |
U:A |
WC [cWW][XX] |
10.3 |
56.9; 56.76 |
0.14 |
-2.35 |
0.02 |
2.71 |
| dsRNA |
1YYO |
9!C:16!D |
C:G |
WC [cWW][XIX] |
10.71 |
58.19; 54.74 |
3.45 |
-0.8 |
0.24 |
1.47 |
| dsRNA |
1YYO |
1!0C:15!D |
G:C |
WC [cWW][XIX] |
10.77 |
55.83; 58.25 |
2.42 |
-15.28 |
0.21 |
22.19 |
| dsRNA |
1YYO |
11!C:14!D |
C:G |
WC [cWW][XIX] |
10.6 |
57.03; 51.8 |
5.23 |
-20.02 |
0.08 |
26.97 |
| dsRNA |
1YYO |
12!C:13!D |
G:C |
WC [cWW][XIX] |
10.73 |
57.51; 55.38 |
2.12 |
-9.72 |
0.22 |
15.89 |
| dsRNA |
1YYO |
1E:24F |
C:G |
Wb* [---][-] |
11.48 |
36.63; 56.93 |
20.3 |
-5.02 |
0.04 |
8.92 |
| dsRNA |
1YYO |
2!E:23!F |
G:C |
WC [cWW][XIX] |
10.33 |
54.03; 62.86 |
8.83 |
-10.5 |
0.33 |
14.5 |
| dsRNA |
1YYO |
3!E:22!F |
C:G |
WC [cWW][XIX] |
10.53 |
58.05; 52.84 |
5.2 |
-9.9 |
0.2 |
16.77 |
| dsRNA |
1YYO |
4!E:21!F |
G:C |
WC [cWW][XIX] |
10.68 |
55.57; 52.67 |
2.9 |
-5.26 |
0.34 |
10.66 |
| dsRNA |
1YYO |
5!E:20!F |
A:U |
WC [cWW][XX] |
10.53 |
53.56; 53.5 |
0.06 |
-0.87 |
0.06 |
2.4 |
| dsRNA |
1YYO |
6!E:19!F |
A:U |
WC [cWW][XX] |
10.53 |
59.27; 55.01 |
4.26 |
-5.42 |
0.19 |
9.25 |
| dsRNA |
1YYO |
7!E:18!F |
U:A |
WC [cWW][XX] |
10.66 |
60.55; 54.23 |
6.32 |
-2.39 |
0.14 |
7.62 |
| dsRNA |
1YYO |
8!E:17!F |
U:A |
WC [cWW][XX] |
10.9 |
58.42; 52.6 |
5.82 |
-4.0 |
0.6 |
19.82 |
| dsRNA |
1YYO |
9!E:16!F |
C:G |
WC [cWW][XIX] |
10.41 |
62.06; 53.95 |
8.11 |
-5.02 |
0.42 |
16.25 |
| dsRNA |
1YYO |
10!E:15!F |
G:C |
WC [cWW][XIX] |
10.53 |
62.72; 56.43 |
6.29 |
-7.23 |
0.2 |
10.63 |
| dsRNA |
1YYO |
11!E:14!F |
C:G |
WC [cWW][XIX] |
10.33 |
58.83; 62.37 |
3.54 |
-14.04 |
0.46 |
15.03 |
| dsRNA |
1YYO |
12!E:13!F |
G:C |
Wb* [---][-] |
10.96 |
61.1; 44.88 |
16.23 |
-8.2 |
0.01 |
12.34 |