Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1Z7F
BPC Identified: 32
Ambiguities: 0
dsRNA |
1Z7F |
1!A:16!D |
G:C |
WC [cWW][XIX] |
10.61 |
51.98; 55.21 |
3.23 |
-1.05 |
0.32 |
8.57 |
dsRNA |
1Z7F |
2!A:15!D |
C:G |
WC [cWW][XIX] |
10.6 |
55.52; 52.12 |
3.4 |
-8.65 |
0.01 |
12.44 |
dsRNA |
1Z7F |
3!A:14!D |
A:U |
WC [cWW][XX] |
10.43 |
57.06; 57.15 |
0.09 |
-3.89 |
0.01 |
5.22 |
dsRNA |
1Z7F |
4!A:13!D |
G:C |
WC [cWW][XIX] |
10.68 |
53.01; 55.93 |
2.92 |
-5.22 |
0.08 |
8.68 |
dsRNA |
1Z7F |
5!A:12!D |
A:U |
WC [cWW][XX] |
10.44 |
55.48; 55.35 |
0.13 |
-7.5 |
0.28 |
13.11 |
dsRNA |
1Z7F |
6!A:11!D |
C:A |
Wb [cWW][-] |
10.52 |
70.27; 42.49 |
27.78 |
-8.66 |
0.19 |
14.86 |
dsRNA |
1Z7F |
7!A:10!D |
U:A |
WC [cWW][XX] |
10.5 |
56.14; 54.78 |
1.36 |
-6.01 |
0.16 |
12.92 |
dsRNA |
1Z7F |
8!A:9!D |
U:A |
WC [cWW][XX] |
10.37 |
56.9; 56.87 |
0.03 |
-9.45 |
0.03 |
13.73 |
dsRNA |
1Z7F |
9!A:8!D |
A:U |
WC [cWW][XX] |
10.37 |
56.89; 56.9 |
0.01 |
-9.45 |
0.03 |
13.73 |
dsRNA |
1Z7F |
10!A:7!D |
A:U |
WC [cWW][XX] |
10.5 |
54.8; 56.14 |
1.34 |
-6.0 |
0.16 |
12.92 |
dsRNA |
1Z7F |
11!A:6!D |
A:C |
Wb [cWW][-] |
10.52 |
42.46; 70.28 |
27.82 |
-8.67 |
0.19 |
14.85 |
dsRNA |
1Z7F |
12!A:5!D |
U:A |
WC [cWW][XX] |
10.44 |
55.34; 55.49 |
0.15 |
-7.5 |
0.28 |
13.1 |
dsRNA |
1Z7F |
13!A:4!D |
C:G |
WC [cWW][XIX] |
10.68 |
55.92; 52.98 |
2.93 |
-5.23 |
0.09 |
8.68 |
dsRNA |
1Z7F |
14!A:3!D |
U:A |
WC [cWW][XX] |
10.43 |
57.17; 57.04 |
0.13 |
-3.89 |
0.01 |
5.22 |
dsRNA |
1Z7F |
15!A:2!D |
G:C |
WC [cWW][XIX] |
10.6 |
52.15; 55.51 |
3.37 |
-8.65 |
0.01 |
12.45 |
dsRNA |
1Z7F |
16!A:1!D |
C:G |
WC [cWW][XIX] |
10.61 |
55.2; 51.98 |
3.23 |
-1.05 |
0.32 |
8.58 |
dsRNA |
1Z7F |
1!B:32!C |
G:C |
WC [cWW][XIX] |
10.78 |
52.36; 55.76 |
3.4 |
-5.47 |
0.09 |
10.67 |
dsRNA |
1Z7F |
2!B:31!C |
C:G |
WC [cWW][XIX] |
10.55 |
57.59; 53.62 |
3.97 |
-15.59 |
0.18 |
19.08 |
dsRNA |
1Z7F |
3!B:30!C |
A:U |
WC [cWW][XX] |
10.4 |
56.35; 57.41 |
1.07 |
-6.37 |
0.01 |
8.51 |
dsRNA |
1Z7F |
4!B:29!C |
G:C |
WC [cWW][XIX] |
10.49 |
54.36; 57.22 |
2.86 |
-7.05 |
0.03 |
15.51 |
dsRNA |
1Z7F |
5!B:28!C |
A:U |
WC [cWW][XX] |
10.31 |
56.97; 56.44 |
0.53 |
-9.27 |
0.2 |
15.55 |
dsRNA |
1Z7F |
6!B:27!C |
C:A |
Wb [cWW][-] |
10.31 |
77.51; 43.51 |
34.0 |
-7.15 |
0.08 |
12.61 |
dsRNA |
1Z7F |
7!B:26!C |
U:A |
WC [cWW][XX] |
10.29 |
57.34; 55.1 |
2.24 |
-10.59 |
0.04 |
12.63 |
dsRNA |
1Z7F |
8!B:25!C |
U:A |
WC [cWW][XX] |
10.31 |
57.21; 56.71 |
0.5 |
-8.09 |
0.01 |
9.15 |
dsRNA |
1Z7F |
9!B:24!C |
A:U |
WC [cWW][XX] |
10.23 |
59.1; 58.39 |
0.71 |
-14.5 |
0.05 |
16.77 |
dsRNA |
1Z7F |
10!B:23!C |
A:U |
WC [cWW][XX] |
10.53 |
54.06; 54.97 |
0.91 |
-6.64 |
0.03 |
9.74 |
dsRNA |
1Z7F |
11!B:22!C |
A:C |
Wb [cWW][-] |
10.15 |
43.63; 77.57 |
33.94 |
-12.14 |
0.4 |
16.4 |
dsRNA |
1Z7F |
12!B:21!C |
U:A |
WC [cWW][XX] |
10.13 |
60.62; 56.07 |
4.55 |
-7.88 |
0.09 |
9.45 |
dsRNA |
1Z7F |
13!B:20!C |
C:G |
WC [cWW][XIX] |
10.58 |
55.56; 54.85 |
0.71 |
-6.62 |
0.08 |
13.2 |
dsRNA |
1Z7F |
14!B:19!C |
U:A |
WC [cWW][XX] |
10.27 |
56.06; 56.09 |
0.03 |
-4.75 |
0.05 |
8.82 |
dsRNA |
1Z7F |
15!B:18!C |
G:C |
WC [cWW][XIX] |
10.48 |
55.31; 56.21 |
0.9 |
-7.04 |
0.04 |
8.89 |
dsRNA |
1Z7F |
16!B:17!C |
C:G |
WC [cWW][XIX] |
10.63 |
54.31; 51.4 |
2.92 |
-8.07 |
0.38 |
17.49 |