Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1ZCI
BPC Identified: 40
Ambiguities: 0
vRNA |
1ZCI |
1!A:23!A |
C:G |
WC [cWW][XIX] |
10.78 |
52.69; 53.17 |
0.49 |
-18.23 |
0.28 |
20.63 |
vRNA |
1ZCI |
2!A:22!A |
U:A |
WC [cWW][XX] |
10.58 |
53.48; 55.04 |
1.56 |
-18.93 |
0.19 |
20.83 |
vRNA |
1ZCI |
3!A:21!A |
U:A |
WC [cWW][XX] |
10.61 |
54.31; 54.62 |
0.31 |
-12.38 |
0.03 |
14.48 |
vRNA |
1ZCI |
4!A:20!A |
G:C |
WC [cWW][XIX] |
10.56 |
53.89; 56.1 |
2.21 |
-12.92 |
0.11 |
17.26 |
vRNA |
1ZCI |
5!A:19!A |
C:G |
WC [cWW][XIX] |
10.73 |
53.68; 52.58 |
1.1 |
-12.63 |
0.14 |
15.43 |
vRNA |
1ZCI |
6!A:18!A |
U:A |
WC [cWW][XX] |
10.45 |
56.15; 56.23 |
0.08 |
-13.09 |
0.11 |
13.21 |
vRNA |
1ZCI |
7!A:17!A |
G:C |
WC [cWW][XIX] |
10.57 |
55.98; 54.73 |
1.26 |
-9.98 |
0.15 |
14.44 |
vRNA |
1ZCI |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.52 |
53.81; 56.4 |
2.58 |
-10.33 |
0.42 |
15.78 |
vRNA |
1ZCI |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.52 |
55.61; 55.24 |
0.36 |
-9.51 |
0.13 |
13.05 |
vRNA |
1ZCI |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.58 |
56.91; 55.43 |
1.48 |
-5.12 |
0.23 |
10.9 |
vRNA |
1ZCI |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.58 |
55.41; 55.22 |
0.2 |
-5.51 |
0.01 |
9.29 |
vRNA |
1ZCI |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.49 |
55.94; 54.72 |
1.22 |
-8.13 |
0.09 |
10.68 |
vRNA |
1ZCI |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.48 |
56.68; 55.35 |
1.33 |
-12.99 |
0.73 |
20.92 |
vRNA |
1ZCI |
1!B:23!B |
C:G |
WC [cWW][XIX] |
10.74 |
52.12; 54.05 |
1.93 |
-16.28 |
0.33 |
21.26 |
vRNA |
1ZCI |
2!B:22!B |
U:A |
WC [cWW][XX] |
10.59 |
53.92; 55.55 |
1.63 |
-17.47 |
0.16 |
20.27 |
vRNA |
1ZCI |
3!B:21!B |
U:A |
WC [cWW][XX] |
10.69 |
54.24; 53.72 |
0.53 |
-11.54 |
0.21 |
14.9 |
vRNA |
1ZCI |
4!B:20!B |
G:C |
WC [cWW][XIX] |
10.59 |
54.8; 55.99 |
1.19 |
-11.4 |
0.26 |
17.08 |
vRNA |
1ZCI |
5!B:19!B |
C:G |
WC [cWW][XIX] |
10.74 |
54.5; 53.35 |
1.15 |
-11.22 |
0.05 |
15.22 |
vRNA |
1ZCI |
6!B:18!B |
U:A |
WC [cWW][XX] |
10.44 |
58.47; 55.77 |
2.7 |
-14.88 |
0.17 |
14.66 |
vRNA |
1ZCI |
7!B:17!B |
G:C |
WC [cWW][XIX] |
10.53 |
57.57; 55.08 |
2.49 |
-9.09 |
0.04 |
13.96 |
vRNA |
1ZCI |
1!C:23!C |
C:G |
WC [cWW][XIX] |
10.77 |
52.91; 53.57 |
0.66 |
-18.03 |
0.36 |
22.8 |
vRNA |
1ZCI |
2!C:22!C |
U:A |
WC [cWW][XX] |
10.55 |
53.78; 55.68 |
1.91 |
-17.88 |
0.11 |
20.81 |
vRNA |
1ZCI |
3!C:21!C |
U:A |
WC [cWW][XX] |
10.57 |
54.34; 54.37 |
0.02 |
-13.16 |
0.14 |
15.57 |
vRNA |
1ZCI |
4!C:20!C |
G:C |
WC [cWW][XIX] |
10.58 |
53.87; 55.97 |
2.1 |
-12.1 |
0.0 |
16.67 |
vRNA |
1ZCI |
5!C:19!C |
C:G |
WC [cWW][XIX] |
10.72 |
53.96; 53.26 |
0.71 |
-12.64 |
0.09 |
15.8 |
vRNA |
1ZCI |
6!C:18!C |
U:A |
WC [cWW][XX] |
10.4 |
56.53; 56.88 |
0.35 |
-13.11 |
0.11 |
13.91 |
vRNA |
1ZCI |
7!C:17!C |
G:C |
WC [cWW][XIX] |
10.56 |
56.02; 55.27 |
0.75 |
-9.2 |
0.09 |
14.12 |
vRNA |
1ZCI |
10!C:15!D |
G:C |
WC [cWW][XIX] |
10.51 |
53.29; 56.35 |
3.07 |
-10.28 |
0.67 |
19.37 |
vRNA |
1ZCI |
11!C:14!D |
U:A |
WC [cWW][XX] |
10.53 |
55.26; 55.63 |
0.37 |
-8.94 |
0.08 |
11.42 |
vRNA |
1ZCI |
12!C:13!D |
G:C |
WC [cWW][XIX] |
10.63 |
56.58; 54.74 |
1.84 |
-4.59 |
0.09 |
9.3 |
vRNA |
1ZCI |
13!C:12!D |
C:G |
WC [cWW][XIX] |
10.53 |
56.0; 55.24 |
0.76 |
-7.22 |
0.09 |
10.45 |
vRNA |
1ZCI |
14!C:11!D |
A:U |
WC [cWW][XX] |
10.52 |
55.15; 53.91 |
1.23 |
-8.55 |
0.06 |
11.2 |
vRNA |
1ZCI |
15!C:10!D |
C:G |
WC [cWW][XIX] |
10.53 |
55.93; 56.69 |
0.76 |
-11.82 |
0.66 |
20.22 |
vRNA |
1ZCI |
1!D:23!D |
C:G |
WC [cWW][XIX] |
10.75 |
52.92; 53.74 |
0.82 |
-15.42 |
0.21 |
18.25 |
vRNA |
1ZCI |
2!D:22!D |
U:A |
WC [cWW][XX] |
10.64 |
52.67; 55.23 |
2.56 |
-16.82 |
0.11 |
20.81 |
vRNA |
1ZCI |
3!D:21!D |
U:A |
WC [cWW][XX] |
10.68 |
54.5; 53.66 |
0.85 |
-9.47 |
0.12 |
13.81 |
vRNA |
1ZCI |
4!D:20!D |
G:C |
WC [cWW][XIX] |
10.54 |
54.45; 56.04 |
1.6 |
-10.84 |
0.18 |
15.29 |
vRNA |
1ZCI |
5!D:19!D |
C:G |
WC [cWW][XIX] |
10.75 |
53.37; 53.33 |
0.03 |
-10.1 |
0.02 |
14.49 |
vRNA |
1ZCI |
6!D:18!D |
U:A |
WC [cWW][XX] |
10.48 |
57.89; 55.8 |
2.09 |
-12.71 |
0.17 |
12.76 |
vRNA |
1ZCI |
7!D:17!D |
G:C |
WC [cWW][XIX] |
10.55 |
57.39; 55.24 |
2.14 |
-9.43 |
0.02 |
13.59 |