Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 1ZHO BPC Identified: 70 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
mRNA 1ZHO 1!B:38!B G:C WC [cWW][XIX] 10.46 55.94; 56.28 0.33 -5.24 0.26 12.98
mRNA 1ZHO 2!B:37!B G:C WC [cWW][XIX] 10.67 55.32; 55.2 0.12 -12.96 0.34 10.6
mRNA 1ZHO 3!B:36!B G:C WC [cWW][XIX] 10.75 50.81; 54.58 3.77 -11.84 0.36 12.81
mRNA 1ZHO 4!B:35!B A:U WC [cWW][XX] 11.04 53.35; 49.58 3.77 -6.03 0.03 7.24
mRNA 1ZHO 5!B:34!B G:C WC [cWW][XIX] 10.54 56.19; 53.68 2.51 -8.65 0.09 6.96
mRNA 1ZHO 6!B:33!B U:A WC [cWW][XX] 10.59 55.92; 52.72 3.21 -17.29 0.42 15.14
mRNA 1ZHO 7!B:32!B G:C WC [cWW][XIX] 10.7 54.68; 52.14 2.54 -9.89 0.16 14.18
mRNA 1ZHO 8!B:31!B A:U WC [cWW][XX] 10.39 57.51; 57.68 0.17 -5.28 0.24 14.07
mRNA 1ZHO 9!B:30!B A:U WC [cWW][XX] 10.17 60.11; 61.47 1.35 -9.95 0.26 16.03
mRNA 1ZHO 10!B:29!B G:C WC [cWW][XIX] 10.43 58.24; 55.15 3.08 -12.15 0.07 27.52
mRNA 1ZHO 11!B:28!B G:A S [tSH][XI] 9.69 94.67; 6.96 87.71 -6.13 0.59 18.18
mRNA 1ZHO 12!B:23!B A:G rS [tSS][-] 8.3 58.38; 96.92 38.53 141.52 0.78 47.16
mRNA 1ZHO 13!B:28!B G:A rS [tSS][-] 8.16 84.74; 58.86 25.88 -155.09 0.9 46.97
mRNA 1ZHO 13!B:22!B G:C WC [cWW][XIX] 10.57 54.34; 57.45 3.11 -0.02 0.39 10.03
mRNA 1ZHO 14!B:21!B G:C WC [cWW][XIX] 10.76 54.62; 55.58 0.95 2.55 0.42 14.23
mRNA 1ZHO 15!B:20!B C:G WC [cWW][XIX] 10.6 53.43; 55.91 2.48 4.57 0.33 3.89
mRNA 1ZHO 16!B:19!B U:G fS_1 [tSW][-] 9.72 100.73; 25.58 75.15 169.99 0.45 14.78
mRNA 1ZHO 1!D:38!D G:C WC [cWW][XIX] 10.74 53.02; 50.99 2.03 -4.48 0.04 4.43
mRNA 1ZHO 2!D:37!D G:C WC [cWW][XIX] 10.59 55.75; 56.05 0.3 -13.42 0.06 14.29
mRNA 1ZHO 3!D:36!D G:C WC [cWW][XIX] 10.62 54.15; 55.69 1.55 -14.5 0.26 16.6
mRNA 1ZHO 4!D:35!D A:U WC [cWW][XX] 10.43 53.59; 55.53 1.94 -8.16 0.42 9.82
mRNA 1ZHO 5!D:34!D G:C WC [cWW][XIX] 10.46 53.81; 56.61 2.8 -12.55 0.26 16.09
mRNA 1ZHO 6!D:33!D U:A WC [cWW][XX] 10.59 52.09; 56.74 4.66 -18.67 0.23 19.12
mRNA 1ZHO 7!D:32!D G:C WC [cWW][XIX] 10.64 52.15; 54.88 2.74 -12.81 0.19 19.31
mRNA 1ZHO 8!D:31!D A:U WC [cWW][XX] 10.33 57.25; 58.15 0.9 -3.93 0.08 11.35
mRNA 1ZHO 9!D:30!D A:U WC [cWW][XX] 10.03 62.25; 62.93 0.68 -10.71 0.17 18.04
mRNA 1ZHO 10!D:29!D G:C WC [cWW][XIX] 10.23 58.13; 57.9 0.23 -15.41 0.48 28.89
mRNA 1ZHO 11!D:28!D G:A S [tSH][XI] 9.38 96.12; 5.64 90.49 1.75 0.49 16.15
mRNA 1ZHO 12!D:23!D A:G rS [tSS][-] 8.18 59.34; 95.47 36.13 144.75 1.08 41.84
mRNA 1ZHO 13!D:28!D G:A rS [tSS][-] 7.94 86.87; 57.45 29.42 -157.61 0.64 46.22
mRNA 1ZHO 13!D:22!D G:C WC [cWW][XIX] 10.57 56.04; 56.58 0.54 -4.09 0.03 15.37
mRNA 1ZHO 14!D:21!D G:C WC [cWW][XIX] 10.76 53.65; 54.94 1.28 0.05 0.08 7.88
mRNA 1ZHO 15!D:20!D C:G WC [cWW][XIX] 10.6 57.48; 53.97 3.5 2.67 0.79 1.12
mRNA 1ZHO 16!D:19!D U:G fS_1 [tSW][-] 9.65 96.61; 22.54 74.06 176.39 0.12 6.56
mRNA 1ZHO 1!F:38!F G:C WC [cWW][XIX] 10.39 56.5; 55.43 1.07 -4.64 0.21 10.8
mRNA 1ZHO 2!F:37!F G:C WC [cWW][XIX] 10.55 51.56; 53.73 2.18 -12.95 0.22 11.01
mRNA 1ZHO 3!F:36!F G:C WC [cWW][XIX] 10.8 52.71; 53.07 0.36 -14.99 0.24 20.66
mRNA 1ZHO 4!F:35!F A:U WC [cWW][XX] 10.59 55.27; 55.71 0.44 -5.83 0.06 8.8
mRNA 1ZHO 5!F:34!F G:C WC [cWW][XIX] 10.41 55.42; 58.2 2.79 -13.93 0.04 18.23
mRNA 1ZHO 6!F:33!F U:A WC [cWW][XX] 10.69 54.79; 52.36 2.44 -11.73 0.15 19.79
mRNA 1ZHO 7!F:32!F G:C WC [cWW][XIX] 10.67 55.67; 53.64 2.03 -10.66 0.21 14.77
mRNA 1ZHO 8!F:31!F A:U WC [cWW][XX] 10.29 59.57; 57.99 1.58 -4.02 0.03 8.66
mRNA 1ZHO 9!F:30!F A:U WC [cWW][XX] 10.0 60.43; 64.43 4.01 -10.6 0.05 19.43
mRNA 1ZHO 10!F:29!F G:C WC [cWW][XIX] 10.41 57.7; 55.42 2.27 -11.98 0.62 27.77
mRNA 1ZHO 11!F:28!F G:A S [tSH][XI] 9.53 100.17; 7.5 92.67 -9.27 0.47 21.51
mRNA 1ZHO 12!F:23!F A:G rS [tSS][-] 8.49 58.06; 95.21 37.15 140.36 1.41 43.79
mRNA 1ZHO 13!F:28!F G:A rS [tSS][-] 8.05 84.62; 58.79 25.83 -152.43 1.73 49.69
mRNA 1ZHO 13!F:22!F G:C WC [cWW][XIX] 10.56 55.85; 58.02 2.16 3.33 0.01 10.95
mRNA 1ZHO 14!F:21!F G:C WC [cWW][XIX] 10.36 56.14; 58.73 2.59 1.94 0.1 18.43
mRNA 1ZHO 15!F:20!F C:G WC [cWW][XIX] 10.5 54.47; 55.13 0.66 2.95 0.96 10.16
mRNA 1ZHO 16!F:19!F U:G fS_1 [tSW][-] 10.1 91.98; 25.27 66.71 -174.83 0.68 14.37
mRNA 1ZHO 1!H:38!H G:C WC [cWW][XIX] 10.49 53.97; 59.18 5.21 -3.46 0.25 2.05
mRNA 1ZHO 2!H:37!H G:C WC [cWW][XIX] 10.6 56.85; 53.34 3.51 -6.02 0.13 11.02
mRNA 1ZHO 3!H:36!H G:C WC [cWW][XIX] 10.51 56.43; 59.24 2.8 -11.9 0.15 14.96
mRNA 1ZHO 4!H:35!H A:U WC [cWW][XX] 10.03 58.96; 61.95 2.99 -11.08 0.0 13.42
mRNA 1ZHO 5!H:34!H G:C WC [cWW][XIX] 10.41 56.53; 57.82 1.29 -15.29 0.13 23.09
mRNA 1ZHO 6!H:33!H U:A WC [cWW][XX] 10.49 55.8; 54.33 1.47 -20.63 0.07 24.16
mRNA 1ZHO 7!H:32!H G:C WC [cWW][XIX] 10.53 57.21; 55.98 1.23 -7.04 0.11 10.84
mRNA 1ZHO 8!H:31!H A:U WC [cWW][XX] 10.45 57.28; 56.23 1.05 -4.29 0.47 12.98
mRNA 1ZHO 9!H:30!H A:U WC [cWW][XX] 10.23 58.06; 62.57 4.51 -5.72 0.26 12.87
mRNA 1ZHO 10!H:29!H G:C WC [cWW][XIX] 10.15 60.84; 59.0 1.84 -12.82 0.33 24.76
mRNA 1ZHO 11!H:28!H G:A S [tSH][XI] 9.18 100.32; 5.17 95.15 -59.19 0.37 15.94
mRNA 1ZHO 12!H:23!H A:G rS [tSS][-] 8.05 60.65; 94.31 33.65 141.5 0.87 46.23
mRNA 1ZHO 13!H:28!H G:A rS [tSS][-] 7.71 87.24; 57.95 29.29 -157.21 1.32 46.41
mRNA 1ZHO 13!H:22!H G:C WC [cWW][XIX] 10.3 56.77; 60.14 3.37 5.66 0.02 10.1
mRNA 1ZHO 14!H:21!H G:C WC [cWW][XIX] 10.67 55.89; 54.88 1.02 6.04 0.05 18.32
mRNA 1ZHO 15!H:20!H C:G WC [cWW][XIX] 10.7 53.56; 53.35 0.21 6.11 0.23 11.15
mRNA 1ZHO 16!H:19!H U:G fS_1 [tSW][-] 9.52 104.78; 22.89 81.89 158.45 0.11 14.6
mRNA 1ZHO 17!H:19!H U:G S(sb:O2*-N7)_2 [---][-] 8.58 126.61; 21.14 105.48 60.39 0.69 45.98
mRNA 1ZHO 22!H:28!H C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.78 104.92; 156.45 51.53 -22.02 2.63 46.08