Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1ZJW
BPC Identified: 32
Ambiguities: 0
| tRNA |
1ZJW |
902!B:971!B |
G:C |
WC [cWW][XIX] |
10.9 |
45.99; 53.31 |
7.32 |
2.76 |
0.31 |
9.88 |
| tRNA |
1ZJW |
903!B:970!B |
G:C |
WC [cWW][XIX] |
10.48 |
53.69; 55.38 |
1.69 |
-5.57 |
0.01 |
6.66 |
| tRNA |
1ZJW |
904!B:969!B |
G:C |
WC [cWW][XIX] |
10.61 |
53.74; 52.89 |
0.85 |
-13.03 |
0.42 |
18.68 |
| tRNA |
1ZJW |
905!B:968!B |
G:C |
WC [cWW][XIX] |
10.56 |
53.71; 55.42 |
1.71 |
-7.63 |
0.81 |
23.92 |
| tRNA |
1ZJW |
906!B:967!B |
U:A |
WC [cWW][XX] |
10.44 |
57.57; 56.0 |
1.56 |
-10.03 |
0.31 |
14.12 |
| tRNA |
1ZJW |
907!B:966!B |
A:U |
WC [cWW][XX] |
10.62 |
52.83; 54.12 |
1.29 |
-11.78 |
0.02 |
10.53 |
| tRNA |
1ZJW |
908!B:921!B |
U:A |
fS(sb:O2*-N1) [tSW][-] |
8.36 |
97.25; 63.22 |
34.03 |
151.29 |
0.1 |
32.12 |
| tRNA |
1ZJW |
908!B:914!B |
U:A |
rH_1 [tWH][XXIV] |
9.74 |
32.42; 19.09 |
13.33 |
-175.08 |
0.12 |
10.26 |
| tRNA |
1ZJW |
909!B:923!B |
C:G |
rS*_2 [---][-] |
12.58 |
14.63; 11.81 |
2.81 |
16.75 |
1.13 |
39.56 |
| tRNA |
1ZJW |
910!B:925!B |
G:C |
WC [cWW][XIX] |
10.55 |
49.23; 57.96 |
8.73 |
-3.34 |
0.01 |
9.62 |
| tRNA |
1ZJW |
911!B:924!B |
C:G |
WC [cWW][XIX] |
10.6 |
54.8; 56.75 |
1.95 |
-3.66 |
0.16 |
6.66 |
| tRNA |
1ZJW |
912!B:923!B |
C:G |
WC [cWW][XIX] |
10.85 |
53.48; 51.87 |
1.61 |
1.74 |
0.19 |
4.46 |
| tRNA |
1ZJW |
913!B:922!B |
A:A |
S [tSH][-] |
9.54 |
93.11; 10.35 |
82.76 |
-23.33 |
0.03 |
7.68 |
| tRNA |
1ZJW |
914!B:921!B |
A:A |
pfS [cSW][-] |
9.78 |
31.66; 120.34 |
88.68 |
-32.74 |
1.19 |
28.18 |
| tRNA |
1ZJW |
915!B:948!B |
G:C |
rWb [tWW][XXII] |
10.45 |
45.65; 53.86 |
8.21 |
156.89 |
0.27 |
17.21 |
| tRNA |
1ZJW |
918!B:955!B |
G:U |
fS_2 [---][-] |
8.96 |
38.15; 103.05 |
64.9 |
-144.76 |
0.3 |
30.3 |
| tRNA |
1ZJW |
919!B:956!B |
G:C |
WC [cWW][XIX] |
10.57 |
56.59; 56.01 |
0.59 |
-29.75 |
0.86 |
39.35 |
| tRNA |
1ZJW |
926!B:944!B |
A:C |
Wb [cWW][-] |
11.38 |
38.3; 70.58 |
32.28 |
1.28 |
0.52 |
10.78 |
| tRNA |
1ZJW |
927!B:943!B |
C:G |
WC [cWW][XIX] |
10.6 |
55.48; 54.83 |
0.65 |
-8.65 |
0.22 |
15.42 |
| tRNA |
1ZJW |
928!B:942!B |
C:G |
WC [cWW][XIX] |
10.49 |
53.46; 60.27 |
6.81 |
-2.52 |
0.08 |
19.53 |
| tRNA |
1ZJW |
929!B:941!B |
G:C |
WC [cWW][XIX] |
10.92 |
53.89; 47.46 |
6.44 |
-7.66 |
0.19 |
16.65 |
| tRNA |
1ZJW |
930!B:940!B |
G:C |
Wb [---][-] |
10.03 |
55.27; 73.77 |
18.5 |
-12.29 |
0.34 |
17.5 |
| tRNA |
1ZJW |
931!B:939!B |
A:U |
WC [cWW][XX] |
10.56 |
52.5; 57.02 |
4.51 |
-1.51 |
0.1 |
13.47 |
| tRNA |
1ZJW |
932!B:938!B |
U:U |
Wb_mo [cWW][XVI] |
10.73 |
56.85; 26.06 |
30.8 |
12.32 |
0.41 |
16.99 |
| tRNA |
1ZJW |
933!B:937!B |
U:A |
S [tSH][-] |
9.45 |
80.76; 4.01 |
76.75 |
139.61 |
0.01 |
14.94 |
| tRNA |
1ZJW |
949!B:965!B |
C:G |
WC [cWW][XIX] |
10.48 |
54.05; 48.09 |
5.96 |
-5.72 |
0.12 |
10.6 |
| tRNA |
1ZJW |
950!B:964!B |
G:C |
WC [cWW][XIX] |
10.69 |
57.52; 51.91 |
5.61 |
-7.55 |
0.18 |
16.38 |
| tRNA |
1ZJW |
951!B:963!B |
A:U |
WC [cWW][XX] |
10.03 |
56.65; 57.89 |
1.24 |
-8.68 |
0.09 |
11.13 |
| tRNA |
1ZJW |
952!B:962!B |
G:C |
WC [cWW][XIX] |
10.64 |
49.58; 55.79 |
6.2 |
-2.62 |
0.29 |
9.12 |
| tRNA |
1ZJW |
953!B:961!B |
G:C |
WC [cWW][XIX] |
10.37 |
57.12; 58.1 |
0.98 |
-4.76 |
0.35 |
10.5 |
| tRNA |
1ZJW |
954!B:958!B |
U:A |
rH_1 [tWH][XXIV] |
10.52 |
39.35; 5.82 |
33.52 |
-103.06 |
0.44 |
14.96 |
| tRNA |
1ZJW |
955!B:957!B |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.47 |
78.96; 38.2 |
40.76 |
-162.65 |
0.68 |
38.29 |