Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 1ZO3
BPC Identified: 56
Ambiguities: 0
| tRNA |
1ZO3 |
5!A:68!A |
A:U |
WC [cWW][XX] |
9.91 |
52.07; 60.29 |
8.21 |
2.92 |
1.06 |
4.79 |
| tRNA |
1ZO3 |
6!A:67!A |
U:A |
WC [cWW][XX] |
10.1 |
58.28; 54.49 |
3.8 |
9.88 |
0.51 |
13.28 |
| tRNA |
1ZO3 |
7!A:66!A |
U:A |
WC [cWW][XX] |
10.32 |
55.41; 49.84 |
5.57 |
16.35 |
0.25 |
17.78 |
| tRNA |
1ZO3 |
8!A:14!A |
U:A |
rH_1 [tWH][XXIV] |
9.37 |
26.91; 23.27 |
3.64 |
147.41 |
1.04 |
30.77 |
| tRNA |
1ZO3 |
9!A:23!A |
A:A |
rS* [tHH][-] |
10.64 |
19.72; 14.45 |
5.28 |
117.61 |
1.02 |
30.48 |
| tRNA |
1ZO3 |
10!A:45!A |
G:G |
pS_1 [cSH][-] |
8.98 |
36.71; 122.97 |
86.26 |
-2.11 |
0.4 |
33.7 |
| tRNA |
1ZO3 |
10!A:25!A |
G:C |
WC [cWW][XIX] |
10.47 |
53.88; 55.03 |
1.14 |
-0.22 |
0.38 |
17.31 |
| tRNA |
1ZO3 |
11!A:24!A |
C:G |
WC [cWW][XIX] |
10.32 |
58.04; 50.37 |
7.67 |
-7.69 |
0.25 |
11.1 |
| tRNA |
1ZO3 |
12!A:23!A |
U:A |
WC [cWW][XX] |
10.57 |
51.36; 51.53 |
0.17 |
-0.36 |
0.21 |
2.72 |
| tRNA |
1ZO3 |
13!A:22!A |
C:G |
WC [cWW][XIX] |
10.6 |
50.81; 55.61 |
4.8 |
9.07 |
0.06 |
17.27 |
| tRNA |
1ZO3 |
15!A:48!A |
G:C |
rWb [tWW][XXII] |
10.29 |
39.68; 60.86 |
21.17 |
-171.59 |
0.48 |
6.43 |
| tRNA |
1ZO3 |
16!A:60!A |
U:C |
pfS*_1 [cWS][-] |
6.35 |
32.78; 102.26 |
69.47 |
-140.99 |
0.7 |
56.83 |
| tRNA |
1ZO3 |
19!A:56!A |
G:C |
WC [cWW][XIX] |
10.2 |
56.97; 52.14 |
4.83 |
-15.67 |
1.27 |
43.61 |
| tRNA |
1ZO3 |
22!A:46!A |
G:G |
rH_1 [tWH][VII] |
10.84 |
32.09; 23.78 |
8.32 |
-168.96 |
0.44 |
8.44 |
| tRNA |
1ZO3 |
27!A:43!A |
C:G |
WC [cWW][XIX] |
10.65 |
51.61; 50.88 |
0.73 |
-3.32 |
0.53 |
23.7 |
| tRNA |
1ZO3 |
28!A:42!A |
C:G |
WC [cWW][XIX] |
10.51 |
51.34; 56.64 |
5.31 |
6.16 |
0.19 |
17.99 |
| tRNA |
1ZO3 |
29!A:41!A |
A:U |
WC [cWW][XX] |
10.75 |
49.8; 48.37 |
1.43 |
17.15 |
0.37 |
13.95 |
| tRNA |
1ZO3 |
30!A:40!A |
G:C |
WC [cWW][XIX] |
10.91 |
50.0; 49.47 |
0.53 |
0.92 |
0.55 |
18.86 |
| tRNA |
1ZO3 |
31!A:39!A |
A:U |
Wb*_PSU [---][-] |
11.05 |
55.06; 59.62 |
4.57 |
-2.6 |
0.26 |
11.91 |
| tRNA |
1ZO3 |
33!A:35!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.14 |
70.1; 47.1 |
22.99 |
-164.9 |
1.15 |
25.88 |
| tRNA |
1ZO3 |
49!A:65!A |
C:G |
WC [cWW][XIX] |
10.56 |
50.29; 55.98 |
5.69 |
7.48 |
0.34 |
20.69 |
| tRNA |
1ZO3 |
50!A:64!A |
U:A |
WC [cWW][XX] |
10.6 |
48.63; 53.63 |
5.0 |
17.27 |
0.58 |
11.25 |
| tRNA |
1ZO3 |
51!A:63!A |
G:C |
WC [cWW][XIX] |
10.28 |
50.64; 57.03 |
6.39 |
-0.75 |
0.44 |
13.02 |
| tRNA |
1ZO3 |
52!A:62!A |
U:A |
WC [cWW][XX] |
10.33 |
56.17; 48.76 |
7.41 |
1.93 |
0.42 |
12.67 |
| tRNA |
1ZO3 |
53!A:61!A |
G:C |
WC [cWW][XIX] |
10.53 |
50.44; 53.42 |
2.98 |
12.15 |
0.15 |
22.02 |
| tRNA |
1ZO3 |
54!A:58!A |
U:A |
rH_1 [tWH][XXIV] |
9.27 |
25.58; 26.92 |
1.34 |
-173.22 |
0.81 |
5.11 |
| tRNA |
1ZO3 |
1!B:72!B |
G:C |
WC [cWW][XIX] |
10.15 |
49.69; 59.08 |
9.38 |
4.73 |
0.94 |
4.76 |
| tRNA |
1ZO3 |
2!B:71!B |
C:G |
WC [cWW][XIX] |
10.11 |
56.52; 53.86 |
2.66 |
1.15 |
0.43 |
26.27 |
| tRNA |
1ZO3 |
3!B:70!B |
G:C |
WC [cWW][XIX] |
10.16 |
57.52; 55.79 |
1.72 |
6.01 |
0.97 |
14.16 |
| tRNA |
1ZO3 |
4!B:69!B |
G:U |
Wb [cWW][XXVIII] |
10.18 |
48.81; 60.38 |
11.57 |
9.73 |
0.12 |
19.59 |
| tRNA |
1ZO3 |
5!B:68!B |
A:U |
WC [cWW][XX] |
9.91 |
52.07; 60.28 |
8.21 |
2.89 |
1.05 |
4.82 |
| tRNA |
1ZO3 |
6!B:67!B |
U:A |
WC [cWW][XX] |
10.1 |
58.26; 54.51 |
3.76 |
9.86 |
0.51 |
13.27 |
| tRNA |
1ZO3 |
7!B:66!B |
U:A |
WC [cWW][XX] |
10.32 |
55.4; 49.83 |
5.56 |
16.36 |
0.25 |
17.78 |
| tRNA |
1ZO3 |
8!B:14!B |
U:A |
rH_1 [tWH][XXIV] |
9.37 |
26.91; 23.3 |
3.61 |
147.4 |
1.04 |
30.76 |
| tRNA |
1ZO3 |
9!B:23!B |
A:A |
rS* [tHH][-] |
10.64 |
19.71; 14.43 |
5.28 |
117.7 |
1.02 |
30.47 |
| tRNA |
1ZO3 |
10!B:45!B |
G:G |
pS_1 [cSH][-] |
8.98 |
36.71; 122.96 |
86.25 |
-2.09 |
0.4 |
33.69 |
| tRNA |
1ZO3 |
10!B:25!B |
G:C |
WC [cWW][XIX] |
10.47 |
53.89; 55.02 |
1.13 |
-0.22 |
0.38 |
17.3 |
| tRNA |
1ZO3 |
11!B:24!B |
C:G |
WC [cWW][XIX] |
10.32 |
58.04; 50.37 |
7.67 |
-7.66 |
0.26 |
11.12 |
| tRNA |
1ZO3 |
12!B:23!B |
U:A |
WC [cWW][XX] |
10.63 |
51.31; 51.59 |
0.28 |
-0.06 |
0.26 |
2.72 |
| tRNA |
1ZO3 |
13!B:22!B |
C:G |
WC [cWW][XIX] |
10.6 |
50.82; 55.62 |
4.8 |
9.03 |
0.06 |
17.22 |
| tRNA |
1ZO3 |
15!B:48!B |
G:C |
rWb [tWW][XXII] |
10.29 |
39.67; 60.86 |
21.18 |
-171.52 |
0.48 |
6.39 |
| tRNA |
1ZO3 |
16!B:60!B |
U:C |
pfS*_1 [cWS][-] |
6.35 |
32.78; 102.27 |
69.49 |
-140.99 |
0.7 |
56.81 |
| tRNA |
1ZO3 |
19!B:56!B |
G:C |
WC [cWW][XIX] |
10.2 |
56.96; 52.14 |
4.82 |
-15.69 |
1.27 |
43.6 |
| tRNA |
1ZO3 |
22!B:46!B |
G:G |
rH_1 [tWH][VII] |
10.84 |
32.08; 23.75 |
8.33 |
-168.98 |
0.44 |
8.41 |
| tRNA |
1ZO3 |
27!B:43!B |
C:G |
WC [cWW][XIX] |
10.65 |
51.6; 50.9 |
0.7 |
-3.34 |
0.53 |
23.7 |
| tRNA |
1ZO3 |
28!B:42!B |
C:G |
WC [cWW][XIX] |
10.51 |
51.35; 56.66 |
5.31 |
6.18 |
0.19 |
18.02 |
| tRNA |
1ZO3 |
29!B:41!B |
A:U |
WC [cWW][XX] |
10.75 |
49.81; 48.38 |
1.44 |
17.13 |
0.37 |
13.97 |
| tRNA |
1ZO3 |
30!B:40!B |
G:C |
WC [cWW][XIX] |
10.91 |
50.02; 49.48 |
0.53 |
0.91 |
0.55 |
18.88 |
| tRNA |
1ZO3 |
31!B:39!B |
A:U |
Wb*_PSU [---][-] |
11.05 |
55.08; 59.64 |
4.56 |
-2.6 |
0.26 |
11.9 |
| tRNA |
1ZO3 |
33!B:35!B |
U:A |
S(sb:O2*-N7) [---][-] |
6.14 |
70.09; 47.1 |
22.99 |
-164.87 |
1.15 |
25.89 |
| tRNA |
1ZO3 |
49!B:65!B |
C:G |
WC [cWW][XIX] |
10.56 |
50.25; 56.0 |
5.75 |
7.5 |
0.34 |
20.7 |
| tRNA |
1ZO3 |
50!B:64!B |
U:A |
WC [cWW][XX] |
10.6 |
48.63; 53.62 |
4.99 |
17.25 |
0.58 |
11.25 |
| tRNA |
1ZO3 |
51!B:63!B |
G:C |
WC [cWW][XIX] |
10.28 |
50.63; 57.02 |
6.4 |
-0.75 |
0.44 |
13.01 |
| tRNA |
1ZO3 |
52!B:62!B |
U:A |
WC [cWW][XX] |
10.33 |
56.2; 48.74 |
7.45 |
1.94 |
0.42 |
12.68 |
| tRNA |
1ZO3 |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.53 |
50.41; 53.39 |
2.98 |
12.14 |
0.15 |
22.02 |
| tRNA |
1ZO3 |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
9.27 |
25.58; 26.92 |
1.34 |
-173.18 |
0.81 |
5.08 |