Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2AKE
BPC Identified: 26
Ambiguities: 0
| tRNA |
2AKE |
1!B:72!B |
G:C |
WC [cWW][XIX] |
11.18 |
40.88; 50.62 |
9.73 |
7.35 |
0.02 |
16.23 |
| tRNA |
2AKE |
2!B:71!B |
A:U |
Wb [---][-] |
10.45 |
47.53; 67.7 |
20.17 |
-10.39 |
1.04 |
26.6 |
| tRNA |
2AKE |
3!B:70!B |
C:G |
WC [cWW][XIX] |
11.14 |
55.69; 52.91 |
2.78 |
-5.71 |
0.37 |
26.64 |
| tRNA |
2AKE |
4!B:69!B |
C:G |
WC [cWW][XIX] |
10.41 |
60.83; 58.93 |
1.9 |
-2.93 |
0.26 |
9.63 |
| tRNA |
2AKE |
5!B:68!B |
U:G |
Wb [cWW][XXVIII] |
10.4 |
68.91; 42.47 |
26.44 |
-6.41 |
0.51 |
7.95 |
| tRNA |
2AKE |
6!B:67!B |
C:G |
WC [cWW][XIX] |
10.5 |
57.81; 55.88 |
1.93 |
-9.46 |
0.12 |
19.05 |
| tRNA |
2AKE |
7!B:66!B |
G:C |
WC [cWW][XIX] |
10.5 |
59.97; 51.47 |
8.5 |
-8.38 |
0.16 |
13.64 |
| tRNA |
2AKE |
9!B:22!B |
G:G |
rS* [tHH][-] |
12.07 |
17.07; 21.28 |
4.21 |
-3.75 |
1.38 |
26.93 |
| tRNA |
2AKE |
10!B:25!B |
G:C |
WC_Mo [cWW][XIX] |
10.45 |
54.64; 69.44 |
14.8 |
9.63 |
0.66 |
19.68 |
| tRNA |
2AKE |
11!B:24!B |
C:G |
Wb [---][-] |
10.74 |
62.06; 38.05 |
24.01 |
1.77 |
0.43 |
7.81 |
| tRNA |
2AKE |
12!B:23!B |
G:C |
WC [cWW][XIX] |
10.04 |
57.34; 53.13 |
4.21 |
-23.36 |
0.67 |
43.17 |
| tRNA |
2AKE |
14!B:21!B |
A:A |
pfS [cSW][-] |
8.27 |
45.29; 128.15 |
82.86 |
10.34 |
0.64 |
42.81 |
| tRNA |
2AKE |
15!B:59!B |
A:A |
pfS(sb:O2*-N1) [---][-] |
9.05 |
147.23; 47.9 |
99.33 |
119.4 |
1.71 |
53.63 |
| tRNA |
2AKE |
26!B:44!B |
G:A |
WC [cWW][VIII] |
12.86 |
56.46; 50.34 |
6.12 |
-5.95 |
0.9 |
26.35 |
| tRNA |
2AKE |
27!B:43!B |
U:A |
WC [cWW][XX] |
11.89 |
42.64; 44.82 |
2.18 |
0.07 |
0.09 |
35.46 |
| tRNA |
2AKE |
28!B:42!B |
C:G |
WC [cWW][XIX] |
11.74 |
46.51; 53.72 |
7.2 |
1.57 |
0.08 |
22.38 |
| tRNA |
2AKE |
29!B:41!B |
U:A |
WC [cWW][XX] |
10.53 |
57.5; 57.15 |
0.35 |
7.08 |
0.12 |
7.34 |
| tRNA |
2AKE |
30!B:40!B |
G:C |
WC [cWW][XIX] |
11.0 |
52.56; 56.43 |
3.87 |
-2.93 |
0.21 |
26.19 |
| tRNA |
2AKE |
31!B:39!B |
A:U |
WC [cWW][XX] |
10.7 |
57.38; 51.83 |
5.55 |
-9.79 |
0.31 |
27.04 |
| tRNA |
2AKE |
32!B:38!B |
C:A |
H_2 [---][-] |
11.33 |
70.68; 8.73 |
61.95 |
49.39 |
0.57 |
19.19 |
| tRNA |
2AKE |
49!B:65!B |
G:U |
Wb [cWW][XXVIII] |
10.29 |
40.85; 70.9 |
30.05 |
-9.9 |
0.09 |
17.47 |
| tRNA |
2AKE |
50!B:64!B |
C:G |
WC [cWW][XIX] |
10.52 |
49.13; 56.03 |
6.9 |
-8.53 |
0.04 |
11.97 |
| tRNA |
2AKE |
51!B:63!B |
G:C |
WC [cWW][XIX] |
10.67 |
59.25; 51.92 |
7.33 |
-9.44 |
0.38 |
19.96 |
| tRNA |
2AKE |
52!B:62!B |
U:A |
WC [cWW][XX] |
10.63 |
52.23; 53.55 |
1.32 |
-6.64 |
0.45 |
14.44 |
| tRNA |
2AKE |
53!B:61!B |
G:C |
WC [cWW][XIX] |
10.42 |
49.0; 54.87 |
5.86 |
-22.63 |
0.08 |
26.13 |
| tRNA |
2AKE |
54!B:58!B |
U:A |
rH_1 [tWH][XXIV] |
10.23 |
39.45; 16.42 |
23.02 |
145.16 |
0.5 |
16.83 |