Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2B8S
BPC Identified: 20
Ambiguities: 0
vRNA |
2B8S |
1!A:23!A |
C:G |
WC [cWW][XIX] |
10.52 |
52.25; 55.1 |
2.85 |
-11.44 |
0.5 |
18.98 |
vRNA |
2B8S |
2!A:22!A |
U:A |
WC [cWW][XX] |
10.44 |
55.37; 55.57 |
0.2 |
-15.25 |
0.12 |
18.43 |
vRNA |
2B8S |
3!A:21!A |
U:A |
WC [cWW][XX] |
10.53 |
53.58; 52.52 |
1.07 |
-11.24 |
0.1 |
10.43 |
vRNA |
2B8S |
4!A:20!A |
G:C |
WC [cWW][XIX] |
10.6 |
57.19; 56.01 |
1.18 |
-5.63 |
0.04 |
11.28 |
vRNA |
2B8S |
5!A:19!A |
C:G |
WC [cWW][XIX] |
10.51 |
57.65; 55.47 |
2.18 |
-8.41 |
0.02 |
11.8 |
vRNA |
2B8S |
6!A:18!A |
U:A |
WC [cWW][XX] |
10.25 |
55.63; 56.75 |
1.13 |
-11.85 |
0.04 |
13.45 |
vRNA |
2B8S |
7!A:17!A |
G:C |
WC [cWW][XIX] |
10.42 |
54.07; 57.61 |
3.54 |
-1.49 |
0.28 |
8.79 |
vRNA |
2B8S |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.54 |
54.57; 57.53 |
2.96 |
-7.74 |
0.93 |
24.48 |
vRNA |
2B8S |
11!A:14!B |
U:A |
WC [cWW][XX] |
10.33 |
55.62; 56.32 |
0.69 |
-9.8 |
0.09 |
14.16 |
vRNA |
2B8S |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.63 |
53.94; 54.01 |
0.06 |
-6.02 |
0.06 |
7.33 |
vRNA |
2B8S |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.63 |
54.98; 52.96 |
2.03 |
-5.23 |
0.26 |
9.46 |
vRNA |
2B8S |
14!A:11!B |
A:U |
WC [cWW][XX] |
10.51 |
55.57; 54.0 |
1.57 |
-11.9 |
0.5 |
16.02 |
vRNA |
2B8S |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.52 |
58.63; 54.97 |
3.66 |
-5.08 |
0.71 |
23.38 |
vRNA |
2B8S |
1!B:23!B |
C:G |
WC [cWW][XIX] |
10.57 |
51.3; 55.44 |
4.14 |
-9.11 |
0.25 |
17.89 |
vRNA |
2B8S |
2!B:22!B |
U:A |
WC [cWW][XX] |
10.49 |
53.07; 58.36 |
5.29 |
-10.46 |
0.29 |
12.05 |
vRNA |
2B8S |
3!B:21!B |
U:A |
WC [cWW][XX] |
10.38 |
57.2; 58.93 |
1.73 |
-8.43 |
0.07 |
11.16 |
vRNA |
2B8S |
4!B:20!B |
G:C |
WC [cWW][XIX] |
10.45 |
54.79; 59.17 |
4.37 |
-7.67 |
0.01 |
17.26 |
vRNA |
2B8S |
5!B:19!B |
C:G |
WC [cWW][XIX] |
10.54 |
57.43; 52.8 |
4.63 |
-6.31 |
0.08 |
10.7 |
vRNA |
2B8S |
6!B:18!B |
U:A |
WC [cWW][XX] |
10.15 |
61.14; 55.9 |
5.24 |
-7.75 |
0.03 |
10.2 |
vRNA |
2B8S |
7!B:17!B |
G:C |
WC [cWW][XIX] |
10.44 |
54.94; 55.58 |
0.64 |
0.46 |
0.21 |
6.94 |