Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2BCY
BPC Identified: 29
Ambiguities: 0
| HP_ribozyme |
2BCY |
2!A:13!B |
C:G |
WC [cWW][XIX] |
10.45 |
54.94; 54.5 |
0.44 |
-6.94 |
0.41 |
18.65 |
| HP_ribozyme |
2BCY |
3!A:12!B |
C:G |
WC [cWW][XIX] |
10.47 |
56.91; 56.49 |
0.42 |
-2.66 |
0.07 |
3.94 |
| HP_ribozyme |
2BCY |
4!A:11!B |
C:G |
WC [cWW][XIX] |
10.67 |
56.34; 57.38 |
1.04 |
1.93 |
0.0 |
8.82 |
| HP_ribozyme |
2BCY |
5!A:9!B |
A:A |
S [tSH][-] |
10.3 |
83.98; 1.07 |
82.91 |
90.57 |
0.78 |
7.74 |
| HP_ribozyme |
2BCY |
6!A:25!C |
G:C |
WC [cWW][XIX] |
10.46 |
54.92; 53.91 |
1.01 |
-13.62 |
0.41 |
15.23 |
| HP_ribozyme |
2BCY |
8!A:7!B |
C:A |
Wb* [cWW][-] |
11.63 |
45.7; 69.38 |
23.68 |
-0.52 |
0.06 |
33.71 |
| HP_ribozyme |
2BCY |
9!A:6!B |
C:G |
WC [cWW][XIX] |
10.58 |
58.2; 59.25 |
1.05 |
-8.4 |
0.19 |
11.1 |
| HP_ribozyme |
2BCY |
10!A:5!B |
A:U |
WC [cWW][XX] |
10.37 |
55.27; 57.74 |
2.47 |
-4.63 |
0.06 |
7.11 |
| HP_ribozyme |
2BCY |
11!A:4!B |
C:G |
WC [cWW][XIX] |
10.29 |
61.48; 57.26 |
4.22 |
-3.34 |
0.39 |
11.5 |
| HP_ribozyme |
2BCY |
12!A:3!B |
C:G |
WC [cWW][XIX] |
10.24 |
63.75; 56.27 |
7.48 |
-10.26 |
0.02 |
12.59 |
| HP_ribozyme |
2BCY |
13!A:2!B |
G:C |
WC [cWW][XIX] |
10.32 |
58.64; 56.27 |
2.37 |
-7.09 |
0.09 |
10.24 |
| HP_ribozyme |
2BCY |
10!B:25!C |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.25 |
94.71; 152.93 |
58.22 |
-64.61 |
0.2 |
44.72 |
| HP_ribozyme |
2BCY |
11!B:24!C |
G:A |
rpS(sb:O2*-N3) [---][-] |
5.5 |
154.11; 92.97 |
61.14 |
-76.12 |
1.64 |
51.07 |
| HP_ribozyme |
2BCY |
15!C:49!D |
G:C |
WC [cWW][XIX] |
10.74 |
51.9; 54.19 |
2.29 |
-8.76 |
0.43 |
9.54 |
| HP_ribozyme |
2BCY |
16!C:48!D |
G:C |
WC [cWW][XIX] |
10.69 |
50.03; 57.87 |
7.84 |
-12.06 |
0.11 |
18.24 |
| HP_ribozyme |
2BCY |
17!C:47!D |
C:G |
WC [cWW][XIX] |
10.79 |
53.49; 55.85 |
2.36 |
-6.13 |
0.23 |
13.04 |
| HP_ribozyme |
2BCY |
18!C:46!D |
A:U |
WC [cWW][XX] |
10.32 |
57.69; 58.69 |
0.99 |
-5.93 |
0.1 |
9.46 |
| HP_ribozyme |
2BCY |
19!C:45!D |
G:C |
WC [cWW][XIX] |
10.42 |
54.98; 58.09 |
3.11 |
-2.52 |
0.0 |
7.53 |
| HP_ribozyme |
2BCY |
20!C:44!D |
A:C |
Wb* [cWW][-] |
10.45 |
74.22; 51.12 |
23.1 |
-1.41 |
0.25 |
15.8 |
| HP_ribozyme |
2BCY |
21!C:43!D |
G:A |
S [tSH][XI] |
9.47 |
97.07; 3.29 |
93.78 |
-5.61 |
0.11 |
3.54 |
| HP_ribozyme |
2BCY |
22!C:41!D |
A:U |
rH_1 [tWH][XXIV] |
9.8 |
17.58; 31.5 |
13.92 |
-162.84 |
0.3 |
11.04 |
| HP_ribozyme |
2BCY |
23!C:40!D |
A:A |
rH [tWH][V] |
12.46 |
13.36; 30.05 |
16.69 |
171.7 |
0.55 |
16.74 |
| HP_ribozyme |
2BCY |
24!C:38!D |
A:A |
rpS* [---][-] |
11.92 |
6.12; 48.76 |
42.64 |
158.45 |
0.19 |
8.57 |
| HP_ribozyme |
2BCY |
26!C:36!D |
A:G |
WC [cWW][VIII] |
12.62 |
48.0; 47.35 |
0.64 |
-10.21 |
0.04 |
17.39 |
| HP_ribozyme |
2BCY |
27!C:35!D |
C:G |
WC [cWW][XIX] |
10.57 |
53.17; 53.08 |
0.09 |
-15.1 |
0.43 |
20.84 |
| HP_ribozyme |
2BCY |
28!C:34!D |
A:U |
WC [cWW][XX] |
10.38 |
52.63; 58.38 |
5.74 |
-17.8 |
0.21 |
19.37 |
| HP_ribozyme |
2BCY |
29!C:33!D |
C:G |
WC [cWW][XIX] |
10.62 |
55.78; 53.71 |
2.06 |
-13.04 |
0.19 |
12.21 |
| HP_ribozyme |
2BCY |
30!C:32!D |
G:C |
WC [cWW][XIX] |
10.79 |
52.04; 55.24 |
3.2 |
-13.5 |
0.34 |
10.62 |
| HP_ribozyme |
2BCY |
31!C:31!D |
A:U |
WC [cWW][XX] |
10.5 |
60.81; 50.51 |
10.3 |
-6.33 |
0.12 |
9.12 |