Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2BGG
BPC Identified: 10
Ambiguities: 0
| siRNA |
2BGG |
2!P:13!Q |
U:A |
WC [cWW][XX] |
10.6 |
49.06; 54.78 |
5.72 |
-20.89 |
0.12 |
22.14 |
| siRNA |
2BGG |
3!P:12!Q |
C:G |
WC [cWW][XIX] |
10.92 |
52.57; 48.9 |
3.67 |
-14.01 |
0.02 |
20.2 |
| siRNA |
2BGG |
4!P:11!Q |
G:C |
WC [cWW][XIX] |
10.77 |
56.56; 52.05 |
4.51 |
-11.06 |
0.06 |
12.99 |
| siRNA |
2BGG |
5!P:10!Q |
A:U |
WC [cWW][XX] |
9.79 |
54.05; 63.68 |
9.63 |
-10.44 |
0.18 |
15.31 |
| siRNA |
2BGG |
6!P:9!Q |
C:G |
WC [cWW][XIX] |
10.29 |
55.08; 54.21 |
0.86 |
-7.88 |
0.3 |
13.64 |
| siRNA |
2BGG |
2!R:13!S |
U:A |
WC [cWW][XX] |
11.07 |
54.22; 53.71 |
0.51 |
-17.53 |
0.02 |
21.42 |
| siRNA |
2BGG |
3!R:12!S |
C:G |
WC [cWW][XIX] |
10.49 |
58.33; 61.54 |
3.21 |
-12.21 |
0.23 |
16.32 |
| siRNA |
2BGG |
4!R:11!S |
G:C |
WC [cWW][XIX] |
10.29 |
56.65; 60.88 |
4.23 |
-16.87 |
0.11 |
21.63 |
| siRNA |
2BGG |
5!R:10!S |
A:U |
WC [cWW][XX] |
10.26 |
54.24; 56.84 |
2.61 |
-21.61 |
0.15 |
27.59 |
| siRNA |
2BGG |
6!R:9!S |
C:G |
WC [cWW][XIX] |
10.79 |
50.47; 55.01 |
4.54 |
-7.24 |
0.36 |
14.2 |