Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2CKY BPC Identified: 82 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 2CKY 3!A:77!A G:C WC_Mo [cWW][XIX] 10.53 57.01; 64.97 7.96 -12.11 0.47 9.33
Riboswitch 2CKY 4!A:76!A A:U WC [cWW][XX] 10.23 56.11; 60.04 3.94 -14.91 0.52 20.14
Riboswitch 2CKY 5!A:75!A C:G WC [cWW][XIX] 10.44 53.0; 50.12 2.88 -11.43 0.6 19.06
Riboswitch 2CKY 6!A:73!A C:G WC [cWW][XIX] 10.49 51.99; 53.58 1.59 1.06 0.01 16.4
Riboswitch 2CKY 7!A:39!A A:U WC [cWW][XX] 10.3 54.95; 58.13 3.18 -10.49 0.49 7.5
Riboswitch 2CKY 8!A:72!A G:A rpS [cSS][-] 5.4 109.35; 148.27 38.92 -38.04 0.65 8.31
Riboswitch 2CKY 8!A:38!A G:C WC [cWW][XIX] 10.41 56.56; 57.38 0.82 -11.23 0.03 14.76
Riboswitch 2CKY 9!A:44!A G:A rS [tSS][-] 8.08 93.86; 58.48 35.38 172.89 0.1 11.0
Riboswitch 2CKY 9!A:37!A G:C WC [cWW][XIX] 10.41 60.56; 53.2 7.35 -11.29 0.16 18.71
Riboswitch 2CKY 10!A:36!A G:C WC [cWW][XIX] 10.79 51.46; 49.49 1.97 -10.43 0.38 7.87
Riboswitch 2CKY 11!A:34!A G:G rWb_o [---][-] 13.57 49.72; 3.67 46.05 115.27 0.04 15.62
Riboswitch 2CKY 11!A:30!A G:G rS [tSS][IV] 7.96 77.03; 75.56 1.47 -171.83 0.95 13.58
Riboswitch 2CKY 12!A:33!A U:A H_1 [cWH][XXIII] 7.98 68.82; 55.14 13.67 3.7 0.82 24.0
Riboswitch 2CKY 13!A:59!A G:U rpS [cSS][-] 6.41 105.9; 119.86 13.96 -42.66 1.15 36.69
Riboswitch 2CKY 13!A:26!A G:C WC [cWW][XIX] 10.57 51.55; 54.69 3.14 -5.35 0.21 12.98
Riboswitch 2CKY 14!A:58!A C:A rpS(sb:O2*-N3) [cSS][-] 5.71 134.73; 86.98 47.75 -84.11 0.38 51.96
Riboswitch 2CKY 14!A:25!A C:G WC [cWW][XIX] 10.31 56.2; 52.32 3.88 -6.92 0.4 12.59
Riboswitch 2CKY 15!A:24!A U:G Wb [cWW][XXVIII] 10.42 64.33; 43.22 21.11 -4.23 0.18 6.29
Riboswitch 2CKY 16!A:23!A U:A WC [cWW][XX] 10.54 52.34; 55.85 3.51 -4.69 0.08 4.36
Riboswitch 2CKY 17!A:22!A G:C WC [cWW][XIX] 10.27 60.02; 52.31 7.71 -3.23 0.28 9.93
Riboswitch 2CKY 19!A:21!A U:A H_1 [cWH][XXIII] 8.34 60.8; 56.14 4.67 1.0 0.41 19.73
Riboswitch 2CKY 25!A:57!A G:A fS [tSW][X] 10.33 108.86; 38.65 70.22 96.49 0.18 61.17
Riboswitch 2CKY 27!A:31!A U:A rH_1 [tWH][XXIV] 9.47 31.95; 21.29 10.66 -177.23 0.14 11.57
Riboswitch 2CKY 29!A:36!A A:C rpS(sb:O2*-N3) [cSS][-] 5.94 98.76; 145.49 46.73 -33.98 0.67 19.43
Riboswitch 2CKY 30!A:45!A G:C fS(pb:O1P-N1) [---][-] 12.48 65.41; 128.56 63.15 -40.71 1.59 35.77
Riboswitch 2CKY 37!A:44!A C:A rpS(bs:O2-O2*) [cSS][-] 5.79 103.69; 154.37 50.68 -3.79 0.91 18.65
Riboswitch 2CKY 38!A:72!A C:A fS(sb:O2*-N1)_1 [tSS][-] 8.39 88.49; 57.5 30.99 160.78 0.53 16.79
Riboswitch 2CKY 42!A:72!A G:A S [tSH][XI] 8.96 100.02; 17.55 82.47 72.16 0.56 34.7
Riboswitch 2CKY 43!A:68!A A:A rH [tWH][V] 12.3 18.86; 25.7 6.83 124.62 0.67 24.89
Riboswitch 2CKY 44!A:71!A A:G S [tSH][XI] 9.71 1.79; 90.97 89.18 -33.02 1.36 33.07
Riboswitch 2CKY 45!A:70!A C:G WC [cWW][XIX] 10.61 49.41; 58.17 8.76 -10.95 0.66 28.8
Riboswitch 2CKY 46!A:69!A C:G WC [cWW][XIX] 10.8 51.83; 52.82 0.99 -15.27 0.29 19.01
Riboswitch 2CKY 47!A:68!A U:A WC [cWW][XX] 10.9 55.41; 50.89 4.52 -8.54 0.35 17.35
Riboswitch 2CKY 48!A:66!A G:G H_1 [cWH][VI] 11.23 59.38; 32.27 27.11 7.76 0.98 22.47
Riboswitch 2CKY 49!A:65!A A:C rWC_Mo [---][-] 10.91 10.95; 78.17 67.22 151.72 0.13 20.26
Riboswitch 2CKY 51!A:64!A C:G WC [cWW][XIX] 10.98 53.78; 57.69 3.91 -14.58 0.48 22.92
Riboswitch 2CKY 52!A:63!A A:U WC [cWW][XX] 10.52 60.42; 58.74 1.68 -1.04 0.14 5.33
Riboswitch 2CKY 53!A:62!A G:C WC [cWW][XIX] 10.76 56.45; 49.21 7.24 -1.6 0.17 9.39
Riboswitch 2CKY 54!A:61!A G:C WC [cWW][XIX] 10.75 55.47; 55.63 0.16 -2.36 0.37 11.14
Riboswitch 2CKY 56!A:59!A U:U S(bp:N3-O2P) [---][-] 8.65 83.5; 31.53 51.96 -161.36 0.16 14.08
Riboswitch 2CKY 56!A:58!A U:A S(sb:O2*-N7) [---][-] 6.56 82.51; 43.28 39.23 -166.14 1.38 27.76
Riboswitch 2CKY 3!B:77!B G:C WC [cWW][XIX] 11.04 48.55; 47.3 1.25 -6.8 0.11 6.2
Riboswitch 2CKY 4!B:76!B A:U WC [cWW][XX] 10.36 52.82; 61.2 8.38 -8.06 0.22 14.32
Riboswitch 2CKY 5!B:75!B C:G WC [cWW][XIX] 10.44 55.57; 54.36 1.21 -9.4 0.31 14.01
Riboswitch 2CKY 6!B:73!B C:G WC [cWW][XIX] 10.45 51.98; 61.53 9.55 -3.0 0.44 15.06
Riboswitch 2CKY 7!B:39!B A:U WC [cWW][XX] 10.91 47.83; 49.07 1.24 -5.84 0.0 6.08
Riboswitch 2CKY 8!B:72!B G:A rpS [cSS][-] 5.87 111.36; 146.1 34.75 -39.54 0.61 8.12
Riboswitch 2CKY 8!B:38!B G:C WC [cWW][XIX] 10.83 60.41; 59.31 1.11 -16.46 0.55 12.32
Riboswitch 2CKY 9!B:44!B G:A rS [tSS][-] 8.24 83.55; 61.44 22.11 171.09 0.07 9.29
Riboswitch 2CKY 9!B:37!B G:C WC [cWW][XIX] 10.34 50.86; 53.97 3.12 -12.06 0.36 14.55
Riboswitch 2CKY 10!B:45!B G:C rS(ss:O2*-O2*) [---][-] 5.41 163.92; 154.95 8.97 -65.24 2.23 35.34
Riboswitch 2CKY 10!B:36!B G:C WC [cWW][XIX] 10.71 51.36; 48.1 3.26 -8.35 0.01 12.1
Riboswitch 2CKY 11!B:34!B G:G rWb_o [---][-] 13.5 47.27; 1.46 45.81 138.22 0.24 7.14
Riboswitch 2CKY 11!B:30!B G:G rS [tSS][IV] 8.54 74.95; 76.56 1.61 -172.23 1.1 14.87
Riboswitch 2CKY 12!B:33!B U:A H_1 [cWH][XXIII] 7.82 67.04; 57.6 9.44 1.97 0.34 17.48
Riboswitch 2CKY 13!B:59!B G:U rpS [cSS][-] 6.54 102.57; 119.94 17.37 -38.12 1.75 36.47
Riboswitch 2CKY 13!B:26!B G:C WC [cWW][XIX] 10.41 48.55; 51.84 3.29 -5.91 0.46 18.85
Riboswitch 2CKY 14!B:58!B C:A rS [tSS][-] 5.48 134.87; 93.0 41.87 -75.98 0.36 47.56
Riboswitch 2CKY 14!B:25!B C:G WC [cWW][XIX] 10.48 56.33; 48.55 7.79 -8.89 0.33 14.78
Riboswitch 2CKY 15!B:24!B U:G Wb [cWW][XXVIII] 10.57 67.63; 37.88 29.75 -11.66 0.1 18.44
Riboswitch 2CKY 16!B:23!B U:A WC [cWW][XX] 10.93 51.54; 53.93 2.39 -0.31 0.02 1.12
Riboswitch 2CKY 17!B:22!B G:C WC [cWW][XIX] 10.75 54.6; 48.67 5.92 -8.0 0.16 9.62
Riboswitch 2CKY 19!B:21!B U:A H_1 [cWH][XXIII] 8.27 57.73; 51.53 6.19 1.73 0.85 24.73
Riboswitch 2CKY 25!B:57!B G:A fS [tSW][X] 10.35 103.01; 36.16 66.85 99.2 0.13 54.79
Riboswitch 2CKY 27!B:31!B U:A rH_1 [tWH][XXIV] 9.52 33.61; 17.1 16.51 -177.83 0.33 4.95
Riboswitch 2CKY 29!B:36!B A:C rpS(sb:O2*-N3) [cSS][-] 6.28 92.82; 147.26 54.44 -23.87 0.32 11.82
Riboswitch 2CKY 37!B:44!B C:A rpS(bs:O2-O2*) [cSS][-] 5.62 106.33; 155.69 49.36 -14.4 0.9 16.84
Riboswitch 2CKY 38!B:72!B C:A fS(sb:O2*-N1)_1 [tSS][-] 8.59 91.97; 55.22 36.76 159.8 0.1 18.53
Riboswitch 2CKY 42!B:72!B G:A S [tSH][XI] 9.45 100.97; 18.87 82.1 89.53 0.93 27.83
Riboswitch 2CKY 43!B:68!B A:A rH [tWH][V] 12.05 20.53; 26.65 6.12 139.56 0.44 21.84
Riboswitch 2CKY 44!B:71!B A:G S [tSH][XI] 9.59 6.03; 92.76 86.73 -49.45 0.18 28.77
Riboswitch 2CKY 45!B:70!B C:G WC [cWW][XIX] 10.8 56.88; 54.45 2.42 -8.18 0.19 28.81
Riboswitch 2CKY 46!B:69!B C:G WC [cWW][XIX] 10.51 54.28; 57.86 3.58 -1.4 0.24 7.52
Riboswitch 2CKY 47!B:68!B U:A WC [cWW][XX] 10.74 58.51; 51.13 7.38 -6.2 0.68 20.59
Riboswitch 2CKY 48!B:66!B G:G H_1 [cWH][VI] 11.65 55.63; 28.82 26.81 10.31 0.66 22.4
Riboswitch 2CKY 49!B:65!B A:C rWC_Mo [---][-] 10.77 4.41; 82.23 77.82 141.31 0.69 25.79
Riboswitch 2CKY 51!B:64!B C:G WC [cWW][XIX] 10.88 43.24; 50.38 7.14 -17.54 1.13 42.06
Riboswitch 2CKY 52!B:63!B A:U WC [cWW][XX] 10.7 54.75; 60.66 5.91 -9.59 0.23 19.37
Riboswitch 2CKY 53!B:62!B G:C WC [cWW][XIX] 10.59 58.2; 52.17 6.03 1.39 0.12 4.75
Riboswitch 2CKY 54!B:61!B G:C WC [cWW][XIX] 10.66 52.6; 54.8 2.2 -3.6 0.24 12.85
Riboswitch 2CKY 56!B:59!B U:U S(bp:N3-O2P) [---][-] 8.41 80.45; 32.26 48.2 -162.42 0.22 28.55
Riboswitch 2CKY 56!B:58!B U:A S(sb:O2*-N7) [---][-] 6.44 79.84; 42.91 36.93 -171.29 0.11 31.87