Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2CZJ BPC Identified: 82 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tmRNA 2CZJ 1!B:72!B G:C WC [cWW][XIX] 10.51 57.69; 47.43 10.25 -0.64 0.43 29.38
tmRNA 2CZJ 2!B:71!B G:C Wb [---][-] 10.44 42.41; 62.47 20.06 -6.56 0.63 24.38
tmRNA 2CZJ 3!B:70!B G:U Wb [cWW][XXVIII] 9.91 41.27; 77.64 36.36 -6.38 0.25 7.18
tmRNA 2CZJ 4!B:69!B G:C WC [cWW][XIX] 10.63 50.24; 58.14 7.89 0.58 0.18 7.49
tmRNA 2CZJ 5!B:68!B G:C WC [cWW][XIX] 10.51 61.4; 52.48 8.93 -11.26 0.02 13.68
tmRNA 2CZJ 6!B:67!B U:A WC [cWW][XX] 10.29 54.0; 58.29 4.29 -2.29 0.07 5.88
tmRNA 2CZJ 7!B:66!B G:C WC [cWW][XIX] 10.81 49.95; 54.04 4.09 -5.63 0.74 20.08
tmRNA 2CZJ 12!B:55!B G:U fS_PSU [---][-] 9.95 44.29; 117.5 73.21 -171.25 0.16 8.47
tmRNA 2CZJ 13!B:56!B G:C WC [cWW][XIX] 10.0 61.2; 55.12 6.08 -9.83 0.88 24.63
tmRNA 2CZJ 19!B:46!B A:G S [tSH][XI] 10.95 24.75; 102.68 77.92 -33.95 1.13 22.2
tmRNA 2CZJ 20!B:35!B C:G WC [cWW][XIX] 10.48 51.58; 53.59 2.01 -3.62 0.14 9.03
tmRNA 2CZJ 21!B:34!B A:U WC [cWW][XX] 10.22 50.52; 54.46 3.94 -7.08 0.04 8.65
tmRNA 2CZJ 22!B:33!B G:U Wb [cWW][XXVIII] 10.89 44.59; 63.47 18.88 -3.03 0.14 13.63
tmRNA 2CZJ 23!B:32!B G:U Wb [cWW][XXVIII] 10.43 37.82; 62.47 24.65 -10.08 0.24 22.73
tmRNA 2CZJ 24!B:31!B G:C Wb* [---][-] 11.69 63.56; 53.87 9.7 -1.0 0.04 17.48
tmRNA 2CZJ 25!B:30!B G:C Wb* [---][-] 10.29 71.25; 58.54 12.71 -2.32 0.11 8.62
tmRNA 2CZJ 49!B:65!B G:C WC [cWW][XIX] 11.41 51.28; 56.65 5.37 -11.89 0.0 11.49
tmRNA 2CZJ 50!B:64!B U:A WC [cWW][XX] 10.26 57.32; 48.09 9.23 -4.18 0.14 9.48
tmRNA 2CZJ 51!B:63!B G:C Wb [---][-] 10.91 47.48; 66.19 18.7 -16.44 0.06 22.03
tmRNA 2CZJ 52!B:62!B G:C WC [cWW][XIX] 10.94 52.36; 46.03 6.33 -10.53 0.4 18.68
tmRNA 2CZJ 53!B:61!B G:C WC_mo [cWW][XIX] 11.82 48.63; 42.3 6.32 7.73 0.15 6.31
tmRNA 2CZJ 54!B:58!B U:A rH_1 [tWH][XXIV] 10.67 35.2; 6.2 29.0 -139.22 0.02 1.98
tmRNA 2CZJ 1!D:72!D G:C WC [cWW][XIX] 10.78 49.21; 65.94 16.73 -7.31 0.75 22.78
tmRNA 2CZJ 2!D:71!D G:C WC [cWW][XIX] 10.87 53.73; 58.49 4.76 -1.52 0.17 6.56
tmRNA 2CZJ 3!D:70!D G:U Wb [cWW][XXVIII] 10.23 51.02; 69.25 18.23 -4.07 0.03 6.49
tmRNA 2CZJ 4!D:69!D G:C WC [cWW][XIX] 10.52 54.66; 61.3 6.64 -4.44 0.49 12.94
tmRNA 2CZJ 5!D:68!D G:C WC [cWW][XIX] 10.62 56.68; 59.79 3.12 -8.93 0.24 15.2
tmRNA 2CZJ 6!D:67!D U:A WC [cWW][XX] 11.09 51.95; 59.98 8.03 -11.26 0.48 21.01
tmRNA 2CZJ 7!D:66!D G:C WC [cWW][XIX] 11.09 52.88; 52.57 0.3 -2.07 0.53 14.6
tmRNA 2CZJ 13!D:56!D G:C WC [cWW][XIX] 10.03 65.05; 49.75 15.3 -14.64 0.43 48.18
tmRNA 2CZJ 20!D:35!D C:G WC [cWW][XIX] 10.47 56.63; 56.66 0.03 -9.05 0.78 1.39
tmRNA 2CZJ 21!D:34!D A:U WC [cWW][XX] 10.65 60.34; 51.79 8.54 -9.34 0.57 14.65
tmRNA 2CZJ 22!D:33!D G:U Wb [cWW][XXVIII] 10.2 50.93; 69.15 18.22 -2.33 0.06 8.09
tmRNA 2CZJ 23!D:32!D G:U Wb [cWW][XXVIII] 9.94 46.23; 69.53 23.3 -13.76 0.14 15.28
tmRNA 2CZJ 24!D:31!D G:C Wb [---][-] 9.97 53.1; 65.69 12.59 -4.03 0.68 17.72
tmRNA 2CZJ 25!D:30!D G:C WC [cWW][XIX] 10.42 55.88; 58.54 2.66 5.18 0.9 26.9
tmRNA 2CZJ 26!D:29!D U:G S [---][-] 9.09 97.35; 7.02 90.33 -72.58 0.84 18.59
tmRNA 2CZJ 49!D:65!D G:C WC [cWW][XIX] 10.84 48.56; 47.4 1.16 -5.33 0.07 12.05
tmRNA 2CZJ 50!D:64!D U:A WC [cWW][XX] 10.54 52.29; 54.46 2.17 2.89 1.24 10.48
tmRNA 2CZJ 51!D:63!D G:C WC [cWW][XIX] 10.15 53.19; 57.13 3.94 12.26 0.16 12.32
tmRNA 2CZJ 52!D:62!D G:C WC [cWW][XIX] 10.85 43.28; 50.66 7.39 9.32 0.28 14.88
tmRNA 2CZJ 53!D:61!D G:C Wb* [---][-] 12.11 55.25; 40.72 14.53 9.72 1.04 24.74
tmRNA 2CZJ 1!F:72!F G:C WC [cWW][XIX] 10.49 57.56; 47.47 10.09 0.77 0.41 30.68
tmRNA 2CZJ 2!F:71!F G:C Wb [---][-] 10.43 42.4; 62.27 19.87 -6.92 0.56 23.43
tmRNA 2CZJ 3!F:70!F G:U Wb [cWW][XXVIII] 9.94 41.33; 77.63 36.3 -5.86 0.34 9.21
tmRNA 2CZJ 4!F:69!F G:C WC [cWW][XIX] 10.65 50.44; 58.47 8.02 0.39 0.14 7.04
tmRNA 2CZJ 5!F:68!F G:C WC [cWW][XIX] 10.51 61.06; 52.79 8.28 -11.24 0.05 13.23
tmRNA 2CZJ 6!F:67!F U:A WC [cWW][XX] 10.28 53.92; 58.22 4.3 -3.75 0.08 6.57
tmRNA 2CZJ 7!F:66!F G:C WC [cWW][XIX] 10.79 50.03; 54.47 4.44 -6.1 0.74 21.36
tmRNA 2CZJ 12!F:55!F G:U fS_PSU [---][-] 10.28 44.84; 122.1 77.26 -157.59 0.3 14.91
tmRNA 2CZJ 13!F:56!F G:C Wb* [---][-] 10.75 68.4; 45.27 23.14 1.35 0.89 22.94
tmRNA 2CZJ 20!F:35!F C:G WC [cWW][XIX] 10.48 51.47; 54.61 3.14 -3.65 0.04 7.52
tmRNA 2CZJ 21!F:34!F A:U WC [cWW][XX] 10.21 51.11; 55.32 4.21 -6.81 0.07 10.03
tmRNA 2CZJ 22!F:33!F G:U Wb [cWW][XXVIII] 10.85 44.58; 63.44 18.86 -3.8 0.22 15.32
tmRNA 2CZJ 23!F:32!F G:U Wb [cWW][XXVIII] 10.41 38.31; 63.57 25.26 -9.97 0.19 22.83
tmRNA 2CZJ 24!F:31!F G:C Wb* [---][-] 11.68 63.25; 53.24 10.0 -0.62 0.0 18.51
tmRNA 2CZJ 25!F:30!F G:C Wb* [---][-] 10.31 70.98; 58.27 12.71 -2.66 0.02 9.37
tmRNA 2CZJ 49!F:65!F G:C WC [cWW][XIX] 11.39 51.76; 56.61 4.85 -11.45 0.0 11.64
tmRNA 2CZJ 50!F:64!F U:A WC [cWW][XX] 10.27 57.24; 48.27 8.97 -3.41 0.19 9.72
tmRNA 2CZJ 51!F:63!F G:C Wb [---][-] 10.91 47.48; 65.98 18.5 -18.05 0.19 22.29
tmRNA 2CZJ 52!F:62!F G:C WC [cWW][XIX] 10.92 52.52; 45.75 6.77 -11.15 0.49 20.36
tmRNA 2CZJ 53!F:61!F G:C WC_mo [cWW][XIX] 11.85 48.01; 42.24 5.77 7.92 0.21 5.99
tmRNA 2CZJ 54!F:58!F U:A rH_1 [tWH][XXIV] 10.65 35.24; 5.73 29.51 -136.54 0.02 1.66
tmRNA 2CZJ 1!H:72!H G:C Wb [---][-] 10.78 49.21; 66.28 17.07 -7.13 0.85 24.74
tmRNA 2CZJ 2!H:71!H G:C WC [cWW][XIX] 10.87 53.61; 58.64 5.02 -2.22 0.13 7.38
tmRNA 2CZJ 3!H:70!H G:U Wb [cWW][XXVIII] 10.25 50.77; 69.12 18.35 -3.24 0.0 6.31
tmRNA 2CZJ 4!H:69!H G:C WC [cWW][XIX] 10.5 54.03; 61.47 7.44 -4.56 0.51 13.37
tmRNA 2CZJ 5!H:68!H G:C WC [cWW][XIX] 10.62 56.5; 59.69 3.18 -9.42 0.17 14.47
tmRNA 2CZJ 6!H:67!H U:A WC [cWW][XX] 11.11 52.18; 60.03 7.85 -11.38 0.59 21.8
tmRNA 2CZJ 7!H:66!H G:C WC [cWW][XIX] 11.05 53.11; 52.84 0.28 -2.14 0.46 13.48
tmRNA 2CZJ 20!H:35!H C:G WC [cWW][XIX] 10.46 56.52; 56.86 0.34 -8.45 0.83 0.29
tmRNA 2CZJ 21!H:34!H A:U WC [cWW][XX] 10.62 60.89; 51.81 9.08 -10.27 0.63 15.17
tmRNA 2CZJ 22!H:33!H G:U Wb [cWW][XXVIII] 10.23 51.13; 69.26 18.13 -2.4 0.07 8.87
tmRNA 2CZJ 23!H:32!H G:U Wb [cWW][XXVIII] 9.95 46.25; 69.8 23.55 -14.11 0.25 15.57
tmRNA 2CZJ 24!H:31!H G:C Wb [---][-] 9.93 53.06; 66.54 13.48 -4.91 0.73 18.33
tmRNA 2CZJ 25!H:30!H G:C WC [cWW][XIX] 10.44 55.92; 58.9 2.98 5.82 0.81 26.21
tmRNA 2CZJ 26!H:29!H U:G S [---][-] 9.1 97.5; 7.52 89.98 -73.61 0.82 19.93
tmRNA 2CZJ 49!H:65!H G:C WC [cWW][XIX] 10.86 48.47; 47.4 1.07 -5.21 0.08 11.92
tmRNA 2CZJ 50!H:64!H U:A WC [cWW][XX] 10.51 52.61; 54.28 1.68 3.02 1.22 10.03
tmRNA 2CZJ 51!H:63!H G:C WC [cWW][XIX] 10.16 53.37; 57.07 3.7 12.69 0.21 13.14
tmRNA 2CZJ 52!H:62!H G:C WC [cWW][XIX] 10.85 43.61; 50.57 6.96 9.07 0.28 15.03
tmRNA 2CZJ 53!H:61!H G:C Wb* [---][-] 12.11 54.83; 41.24 13.59 10.38 1.09 25.08