Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2D2K BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 2D2K 2!A:13!B C:G WC [cWW][XIX] 10.55 60.55; 53.87 6.68 -4.85 0.12 15.66
HP_ribozyme 2D2K 3!A:12!B C:G WC [cWW][XIX] 10.31 56.1; 56.42 0.32 -1.23 0.12 4.67
HP_ribozyme 2D2K 4!A:11!B C:G WC [cWW][XIX] 10.43 60.4; 59.63 0.77 0.17 0.33 9.96
HP_ribozyme 2D2K 5!A:9!B A:A S [tSH][-] 10.27 88.19; 2.97 85.22 -134.01 0.68 28.62
HP_ribozyme 2D2K 6!A:25!C G:C WC [cWW][XIX] 10.71 52.56; 54.94 2.38 -17.97 0.46 20.69
HP_ribozyme 2D2K 7!A:8!B U:G S*_1 [tHS][-] 11.23 16.31; 102.7 86.39 21.65 0.2 15.31
HP_ribozyme 2D2K 8!A:7!B C:A Wb* [cWW][-] 11.32 46.95; 69.02 22.08 3.19 0.26 14.92
HP_ribozyme 2D2K 9!A:6!B C:G WC [cWW][XIX] 10.62 58.1; 58.19 0.09 -3.99 0.25 5.87
HP_ribozyme 2D2K 10!A:5!B A:U WC [cWW][XX] 10.41 57.28; 56.42 0.87 -6.92 0.01 9.42
HP_ribozyme 2D2K 11!A:4!B C:G WC [cWW][XIX] 10.51 63.73; 55.67 8.06 -5.68 0.17 10.23
HP_ribozyme 2D2K 12!A:3!B C:G WC [cWW][XIX] 10.19 63.05; 56.23 6.83 -6.76 0.12 12.72
HP_ribozyme 2D2K 13!A:2!B G:C WC [cWW][XIX] 10.08 62.66; 57.05 5.62 -4.12 0.0 9.7
HP_ribozyme 2D2K 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.68 91.93; 149.58 57.66 -76.01 0.32 50.12
HP_ribozyme 2D2K 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.38 151.01; 95.49 55.52 -75.29 1.28 49.47
HP_ribozyme 2D2K 15!C:49!D G:C WC [cWW][XIX] 10.58 53.0; 57.08 4.07 -14.4 0.51 10.6
HP_ribozyme 2D2K 16!C:48!D G:C WC [cWW][XIX] 10.53 48.47; 58.19 9.72 -9.56 0.29 20.94
HP_ribozyme 2D2K 17!C:47!D C:G WC [cWW][XIX] 10.63 54.83; 56.0 1.17 -9.43 0.27 15.7
HP_ribozyme 2D2K 18!C:46!D A:U WC [cWW][XX] 10.24 56.03; 57.76 1.73 -1.32 0.1 4.19
HP_ribozyme 2D2K 19!C:45!D G:C WC [cWW][XIX] 10.48 56.41; 56.26 0.15 -1.46 0.05 9.54
HP_ribozyme 2D2K 20!C:44!D A:C Wb* [cWW][-] 10.58 70.02; 52.6 17.43 -2.52 0.44 14.52
HP_ribozyme 2D2K 21!C:43!D G:A S [tSH][XI] 9.5 98.91; 5.93 92.98 21.2 0.05 5.96
HP_ribozyme 2D2K 22!C:41!D A:U rH_1 [tWH][XXIV] 9.55 20.18; 35.16 14.98 -165.38 0.21 10.39
HP_ribozyme 2D2K 23!C:40!D A:A rH [tWH][V] 12.44 14.32; 24.7 10.37 168.2 0.18 18.77
HP_ribozyme 2D2K 24!C:38!D A:A rpS* [---][-] 11.91 4.68; 46.15 41.46 127.83 0.17 12.36
HP_ribozyme 2D2K 26!C:36!D A:G WC [cWW][VIII] 12.5 49.54; 50.03 0.49 -7.36 0.18 16.9
HP_ribozyme 2D2K 27!C:35!D C:G WC [cWW][XIX] 10.6 53.61; 53.06 0.56 -16.76 0.39 25.06
HP_ribozyme 2D2K 28!C:34!D A:U WC [cWW][XX] 10.52 54.38; 55.65 1.27 -19.67 0.32 20.98
HP_ribozyme 2D2K 29!C:33!D C:G WC [cWW][XIX] 10.58 59.16; 53.03 6.13 -14.07 0.27 12.89
HP_ribozyme 2D2K 30!C:32!D G:C WC [cWW][XIX] 10.86 52.38; 51.36 1.02 -13.67 0.25 12.69
HP_ribozyme 2D2K 31!C:31!D A:U WC [cWW][XX] 10.48 58.81; 52.83 5.99 -7.71 0.17 10.21