Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2D2L BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 2D2L 2!A:13!B C:G WC [cWW][XIX] 10.59 59.21; 53.96 5.25 -0.26 0.27 8.32
HP_ribozyme 2D2L 3!A:12!B C:G WC [cWW][XIX] 10.57 56.29; 55.38 0.91 3.75 0.07 3.33
HP_ribozyme 2D2L 4!A:11!B C:G WC [cWW][XIX] 10.55 59.12; 56.97 2.16 3.49 0.23 5.98
HP_ribozyme 2D2L 5!A:9!B A:A S [tSH][-] 9.9 91.82; 5.13 86.69 -98.82 0.56 23.12
HP_ribozyme 2D2L 6!A:25!C G:C WC [cWW][XIX] 10.58 53.78; 54.19 0.4 -15.02 0.31 18.41
HP_ribozyme 2D2L 7!A:8!B U:G S*_1 [tHS][-] 11.02 16.12; 100.94 84.82 28.75 0.36 16.96
HP_ribozyme 2D2L 8!A:7!B C:A Wb* [cWW][-] 11.21 47.03; 69.6 22.57 -4.38 0.04 18.39
HP_ribozyme 2D2L 9!A:6!B C:G WC [cWW][XIX] 10.53 57.27; 59.07 1.8 -4.13 0.37 11.12
HP_ribozyme 2D2L 10!A:5!B A:U WC [cWW][XX] 10.58 56.36; 50.41 5.95 -12.1 0.14 17.18
HP_ribozyme 2D2L 11!A:4!B C:G WC [cWW][XIX] 10.6 58.43; 58.21 0.23 -1.78 0.03 7.74
HP_ribozyme 2D2L 12!A:3!B C:G WC [cWW][XIX] 10.48 59.06; 56.82 2.24 -4.93 0.06 7.68
HP_ribozyme 2D2L 13!A:2!B G:C WC [cWW][XIX] 10.48 56.38; 55.03 1.35 -8.86 0.03 14.39
HP_ribozyme 2D2L 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.44 95.22; 148.39 53.17 -82.54 0.32 52.88
HP_ribozyme 2D2L 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.38 150.38; 98.57 51.8 -74.95 1.21 48.07
HP_ribozyme 2D2L 15!C:49!D G:C WC [cWW][XIX] 10.8 53.14; 54.72 1.58 -12.11 0.28 13.11
HP_ribozyme 2D2L 16!C:48!D G:C WC [cWW][XIX] 10.49 50.84; 56.82 5.98 -11.21 0.42 20.93
HP_ribozyme 2D2L 17!C:47!D C:G WC [cWW][XIX] 10.69 56.01; 56.28 0.27 -8.07 0.47 17.65
HP_ribozyme 2D2L 18!C:46!D A:U WC [cWW][XX] 10.3 58.4; 58.37 0.03 -1.46 0.01 2.89
HP_ribozyme 2D2L 19!C:45!D G:C WC [cWW][XIX] 10.39 56.49; 58.82 2.33 3.09 0.07 6.21
HP_ribozyme 2D2L 20!C:44!D A:C Wb* [cWW][-] 10.56 75.61; 49.08 26.53 1.08 0.43 12.11
HP_ribozyme 2D2L 21!C:43!D G:A S [tSH][XI] 9.54 97.2; 4.78 92.43 35.55 0.04 8.32
HP_ribozyme 2D2L 22!C:41!D A:U rH_1 [tWH][XXIV] 9.89 18.84; 31.74 12.9 -160.95 0.35 9.49
HP_ribozyme 2D2L 23!C:40!D A:A rH [tWH][V] 12.76 11.92; 25.35 13.42 179.13 0.22 15.95
HP_ribozyme 2D2L 24!C:38!D A:A rpS* [---][-] 12.05 6.0; 45.76 39.76 -176.74 0.33 9.75
HP_ribozyme 2D2L 26!C:36!D A:G WC [cWW][VIII] 12.59 49.42; 47.02 2.4 -10.91 0.16 18.59
HP_ribozyme 2D2L 27!C:36!D C:G WC_Mo [cWW][XIX] 10.12 74.93; 61.12 13.82 -18.91 2.24 12.34
HP_ribozyme 2D2L 27!C:35!D C:G WC [cWW][XIX] 10.57 54.36; 54.87 0.51 -16.57 0.29 21.42
HP_ribozyme 2D2L 28!C:34!D A:U WC [cWW][XX] 10.4 55.85; 56.46 0.61 -17.5 0.16 21.41
HP_ribozyme 2D2L 29!C:33!D C:G WC [cWW][XIX] 10.55 57.74; 53.29 4.45 -11.4 0.31 16.9
HP_ribozyme 2D2L 30!C:32!D G:C WC [cWW][XIX] 10.88 54.19; 52.28 1.91 -15.9 0.06 17.29
HP_ribozyme 2D2L 31!C:31!D A:U WC [cWW][XX] 10.53 59.09; 50.85 8.24 -10.97 0.13 12.63