Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 2DER BPC Identified: 65 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 2DER 2!C:72!C U:C Wb [---][-] 9.14 72.87; 28.63 44.24 25.95 0.83 38.19
tRNA 2DER 7!C:66!C U:A WC [cWW][XX] 10.31 58.02; 46.45 11.57 -14.49 0.15 18.32
tRNA 2DER 8!C:21!C U:A fS(sb:O2*-N1) [tSW][-] 9.06 83.43; 54.82 28.6 161.95 0.47 17.25
tRNA 2DER 8!C:14!C U:A rH_1 [tWH][XXIV] 9.87 24.75; 19.33 5.42 169.05 0.59 14.14
tRNA 2DER 9!C:23!C C:G rS*_1 [tHH][-] 11.6 9.58; 11.05 1.47 146.25 0.37 8.45
tRNA 2DER 10!C:25!C G:C WC [cWW][XIX] 10.33 52.65; 58.56 5.91 -8.81 0.03 11.91
tRNA 2DER 11!C:24!C U:A WC [cWW][XX] 9.58 65.14; 65.81 0.67 -16.94 0.85 31.14
tRNA 2DER 12!C:23!C C:G WC [cWW][XIX] 10.77 57.37; 50.17 7.2 -2.6 0.75 18.98
tRNA 2DER 13!C:22!C U:G Wb [cWW][XXVIII] 10.11 73.62; 40.93 32.68 -7.19 0.35 8.03
tRNA 2DER 14!C:21!C A:A pfS [cSW][-] 9.3 37.33; 117.61 80.28 -10.87 0.02 11.14
tRNA 2DER 15!C:47!C G:C rWb [tWW][XXII] 10.42 35.0; 68.22 33.22 170.82 0.23 7.33
tRNA 2DER 16!C:60!C A:U rpS(ss:O2*-O2*)_2 [---][-] 6.08 144.25; 125.16 19.09 -172.77 0.32 74.36
tRNA 2DER 17!C:55!C G:U fS_1 [tSW][-] 8.68 26.66; 105.89 79.23 -170.85 0.9 24.45
tRNA 2DER 18!C:56!C G:C WC [cWW][XIX] 10.8 62.06; 46.51 15.55 -27.62 1.74 50.4
tRNA 2DER 20!C:47!C C:C fS [tSW][-] 9.75 77.88; 22.99 54.9 134.57 0.72 22.1
tRNA 2DER 22!C:46!C G:A rH*_1 [tHW][-] 12.05 18.94; 23.14 4.2 -162.42 0.29 17.06
tRNA 2DER 26!C:44!C A:U WC_mo [cWW][XX] 12.33 38.67; 39.62 0.95 -10.16 0.94 22.46
tRNA 2DER 27!C:43!C C:G WC [cWW][XIX] 10.6 52.79; 53.29 0.5 -12.6 0.56 20.86
tRNA 2DER 28!C:42!C C:G WC [cWW][XIX] 10.68 53.78; 51.84 1.94 -9.45 0.36 15.25
tRNA 2DER 29!C:41!C G:C WC [cWW][XIX] 10.38 55.99; 53.0 2.99 -12.11 0.13 21.46
tRNA 2DER 30!C:40!C C:G WC [cWW][XIX] 10.51 55.38; 49.99 5.39 -13.27 0.09 23.29
tRNA 2DER 31!C:39!C C:G WC [cWW][XIX] 10.45 56.64; 54.91 1.72 -10.84 0.21 16.28
tRNA 2DER 32!C:38!C C:C H_2 [---][-] 10.26 85.67; 12.37 73.3 31.64 0.24 25.24
tRNA 2DER 49!C:65!C A:U WC [cWW][XX] 11.07 56.61; 56.28 0.33 -0.43 0.28 2.39
tRNA 2DER 50!C:64!C G:C WC [cWW][XIX] 11.25 54.26; 42.76 11.5 4.5 0.86 14.8
tRNA 2DER 51!C:63!C G:C WC [cWW][XIX] 10.11 56.34; 67.49 11.15 -13.66 0.42 22.47
tRNA 2DER 52!C:62!C G:C Wb [---][-] 10.38 39.73; 62.05 22.32 -13.05 0.4 14.95
tRNA 2DER 53!C:61!C G:C WC [cWW][XIX] 10.6 48.08; 53.51 5.43 -17.26 0.02 19.0
tRNA 2DER 54!C:58!C U:A rH_1 [tWH][XXIV] 10.18 28.84; 10.08 18.76 -164.7 0.32 4.87
tRNA 2DER 55!C:57!C U:G S(sb:O2*-N7)_1 [---][-] 6.75 76.8; 43.75 33.05 -172.15 1.55 27.55
tRNA 2DER 4!D:69!D C:G WC [cWW][XIX] 10.72 43.34; 60.35 17.01 -17.2 0.26 25.48
tRNA 2DER 5!D:68!D C:G WC [cWW][XIX] 10.83 43.1; 58.17 15.07 -9.24 0.74 28.87
tRNA 2DER 6!D:67!D C:G Wb [---][-] 11.0 56.22; 43.26 12.96 -20.51 0.24 26.59
tRNA 2DER 7!D:66!D U:A WC [cWW][XX] 10.76 58.27; 45.21 13.06 -29.61 0.4 30.79
tRNA 2DER 8!D:46!D U:A rpS(sb:O2*-N3) [cSS][-] 5.57 123.28; 95.59 27.69 -41.27 2.16 10.43
tRNA 2DER 8!D:21!D U:A fS(sb:O2*-N1) [tSW][-] 9.03 82.67; 54.69 27.97 163.48 0.47 16.56
tRNA 2DER 8!D:14!D U:A rH_1 [tWH][XXIV] 9.9 23.32; 19.94 3.38 169.64 0.46 14.72
tRNA 2DER 9!D:23!D C:G rS*_1 [tHH][-] 11.58 11.87; 10.0 1.87 134.22 0.26 16.04
tRNA 2DER 9!D:22!D C:G rpS* [cHH][-] 10.94 19.25; 20.77 1.51 -105.6 2.48 17.49
tRNA 2DER 10!D:25!D G:C WC [cWW][XIX] 10.29 53.31; 60.72 7.41 -6.47 0.6 5.54
tRNA 2DER 11!D:24!D U:A WC [cWW][XX] 9.54 65.35; 66.02 0.67 -16.54 0.36 25.5
tRNA 2DER 12!D:23!D C:G WC [cWW][XIX] 10.73 55.37; 50.43 4.94 -2.52 0.56 21.56
tRNA 2DER 13!D:22!D U:G Wb [cWW][XXVIII] 10.09 74.7; 41.78 32.92 -7.15 0.39 12.82
tRNA 2DER 14!D:21!D A:A pfS [cSW][-] 9.41 36.43; 117.41 80.97 -8.74 0.12 11.45
tRNA 2DER 15!D:47!D G:C rWb [tWW][XXII] 10.39 35.54; 68.82 33.28 171.05 0.79 5.39
tRNA 2DER 15!D:20!D G:C fS*_1 [tWS][-] 8.73 95.72; 10.47 85.25 -170.54 0.69 20.21
tRNA 2DER 16!D:60!D A:U rpS(ss:O2*-O2*)_2 [---][-] 6.04 143.13; 126.09 17.04 -168.04 1.18 69.0
tRNA 2DER 17!D:55!D G:U fS_1 [tSW][-] 8.68 28.43; 103.61 75.18 -175.39 0.84 27.81
tRNA 2DER 18!D:56!D G:C WC [cWW][XIX] 10.85 62.32; 47.67 14.66 -24.85 1.58 46.37
tRNA 2DER 20!D:47!D C:C fS [tSW][-] 9.75 78.58; 23.68 54.9 133.18 0.67 25.18
tRNA 2DER 22!D:46!D G:A rH*_1 [tHW][-] 12.07 18.43; 23.63 5.2 -157.13 0.17 18.46
tRNA 2DER 26!D:44!D A:U WC_mo [cWW][XX] 12.35 38.88; 41.24 2.36 -8.93 0.87 20.36
tRNA 2DER 27!D:43!D C:G WC [cWW][XIX] 10.63 53.18; 53.69 0.52 -13.62 0.56 22.95
tRNA 2DER 28!D:42!D C:G WC [cWW][XIX] 10.62 54.05; 51.78 2.27 -8.3 0.3 15.77
tRNA 2DER 29!D:41!D G:C WC [cWW][XIX] 10.38 54.86; 52.98 1.88 -10.69 0.32 21.42
tRNA 2DER 30!D:40!D C:G WC [cWW][XIX] 10.48 56.36; 50.52 5.84 -15.25 0.02 25.55
tRNA 2DER 31!D:39!D C:G WC [cWW][XIX] 10.48 55.5; 54.21 1.29 -10.28 0.3 13.98
tRNA 2DER 32!D:38!D C:C H_2 [---][-] 10.27 86.57; 12.08 74.5 19.82 0.03 30.58
tRNA 2DER 49!D:65!D A:U Wb [---][-] 10.74 48.1; 66.95 18.85 -7.5 0.06 4.98
tRNA 2DER 50!D:64!D G:C WC [cWW][XIX] 11.23 54.45; 42.93 11.52 4.73 0.76 10.9
tRNA 2DER 51!D:63!D G:C WC [cWW][XIX] 10.13 57.31; 66.19 8.88 -8.83 0.15 17.39
tRNA 2DER 52!D:62!D G:C Wb [---][-] 10.44 38.91; 61.68 22.77 -11.32 0.41 14.36
tRNA 2DER 53!D:61!D G:C WC [cWW][XIX] 10.65 48.23; 54.25 6.02 -17.17 0.15 18.56
tRNA 2DER 54!D:58!D U:A rH_1 [tWH][XXIV] 10.17 28.85; 11.25 17.6 176.05 0.16 10.51
tRNA 2DER 55!D:57!D U:G S(sb:O2*-N7)_1 [---][-] 6.86 75.59; 43.78 31.8 -171.62 1.11 29.78