Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2DU3
BPC Identified: 30
Ambiguities: 0
| tRNA |
2DU3 |
901!D:971!D |
G:C |
WC [cWW][XIX] |
10.17 |
55.19; 60.08 |
4.9 |
-10.28 |
0.5 |
43.99 |
| tRNA |
2DU3 |
902!D:970!D |
C:G |
WC [cWW][XIX] |
10.06 |
57.85; 58.05 |
0.2 |
2.41 |
0.05 |
27.71 |
| tRNA |
2DU3 |
903!D:969!D |
C:G |
WC [cWW][XIX] |
10.67 |
50.85; 51.73 |
0.88 |
19.33 |
0.81 |
13.86 |
| tRNA |
2DU3 |
904!D:968!D |
A:U |
WC [cWW][XX] |
9.93 |
60.55; 60.01 |
0.54 |
-11.0 |
0.47 |
11.08 |
| tRNA |
2DU3 |
905!D:967!D |
G:C |
WC [cWW][XIX] |
10.72 |
54.13; 55.37 |
1.24 |
-0.47 |
0.4 |
11.02 |
| tRNA |
2DU3 |
906!D:966!D |
G:C |
WC [cWW][XIX] |
10.61 |
55.29; 55.21 |
0.09 |
-16.2 |
0.43 |
14.63 |
| tRNA |
2DU3 |
907!D:965!D |
G:C |
WC [cWW][XIX] |
10.6 |
53.1; 44.15 |
8.95 |
-32.75 |
0.07 |
39.69 |
| tRNA |
2DU3 |
908!D:946!D |
U:A |
rpS(sb:O2*-N3) [cSS][-] |
6.23 |
133.9; 92.05 |
41.86 |
-38.44 |
0.5 |
30.24 |
| tRNA |
2DU3 |
908!D:914!D |
U:A |
rH_1 [tWH][XXIV] |
10.42 |
27.71; 18.37 |
9.34 |
-160.29 |
0.27 |
17.54 |
| tRNA |
2DU3 |
909!D:913!D |
G:G |
rH_1 [tWH][VII] |
11.31 |
29.74; 31.06 |
1.31 |
126.11 |
0.71 |
36.47 |
| tRNA |
2DU3 |
910!D:924!D |
G:C |
WC [cWW][XIX] |
10.81 |
52.71; 54.22 |
1.51 |
-4.1 |
0.18 |
11.45 |
| tRNA |
2DU3 |
911!D:923!D |
C:G |
WC [cWW][XIX] |
10.34 |
57.88; 57.2 |
0.68 |
-1.14 |
0.92 |
14.19 |
| tRNA |
2DU3 |
912!D:922!D |
A:U |
WC [cWW][XX] |
9.81 |
62.37; 60.21 |
2.16 |
-7.71 |
1.07 |
31.28 |
| tRNA |
2DU3 |
913!D:921!D |
G:U |
S*_2 [---][-] |
9.97 |
94.06; 5.83 |
88.23 |
-165.07 |
0.14 |
15.44 |
| tRNA |
2DU3 |
916!D:958!D |
G:A |
rS [tSS][-] |
8.63 |
84.9; 62.58 |
22.32 |
-164.73 |
0.22 |
19.55 |
| tRNA |
2DU3 |
917!D:954!D |
G:U |
fS_2 [---][-] |
9.36 |
34.67; 103.94 |
69.27 |
-155.25 |
0.75 |
21.77 |
| tRNA |
2DU3 |
918!D:955!D |
G:C |
WC [cWW][XIX] |
10.25 |
62.31; 55.46 |
6.86 |
-28.08 |
1.67 |
49.33 |
| tRNA |
2DU3 |
920!D:958!D |
U:A |
rH*_1 [---][-] |
12.84 |
30.43; 27.55 |
2.88 |
51.79 |
2.55 |
51.75 |
| tRNA |
2DU3 |
927!D:941!D |
C:G |
WC [cWW][XIX] |
10.63 |
56.15; 55.13 |
1.03 |
-4.62 |
0.6 |
14.71 |
| tRNA |
2DU3 |
928!D:940!D |
G:C |
WC [cWW][XIX] |
10.73 |
53.5; 55.6 |
2.1 |
9.04 |
0.04 |
10.8 |
| tRNA |
2DU3 |
929!D:939!D |
G:C |
WC [cWW][XIX] |
10.55 |
55.63; 56.39 |
0.77 |
-3.37 |
0.32 |
23.84 |
| tRNA |
2DU3 |
930!D:938!D |
A:U |
WC [cWW][XX] |
10.16 |
58.41; 57.9 |
0.51 |
-9.19 |
0.83 |
22.74 |
| tRNA |
2DU3 |
931!D:937!D |
C:A |
Wb [cWW][-] |
11.16 |
71.12; 48.3 |
22.82 |
-0.65 |
0.2 |
5.95 |
| tRNA |
2DU3 |
948!D:964!D |
C:G |
WC [cWW][XIX] |
10.92 |
52.0; 51.21 |
0.79 |
-10.86 |
0.15 |
13.25 |
| tRNA |
2DU3 |
949!D:963!D |
C:G |
WC [cWW][XIX] |
10.7 |
54.08; 54.57 |
0.49 |
-10.07 |
0.21 |
19.71 |
| tRNA |
2DU3 |
950!D:962!D |
C:G |
WC [cWW][XIX] |
10.71 |
54.84; 55.58 |
0.74 |
-3.37 |
0.12 |
9.88 |
| tRNA |
2DU3 |
951!D:961!D |
G:C |
WC [cWW][XIX] |
10.67 |
54.3; 55.13 |
0.83 |
-5.66 |
0.12 |
10.29 |
| tRNA |
2DU3 |
952!D:960!D |
G:C |
WC [cWW][XIX] |
10.36 |
59.4; 56.37 |
3.03 |
-9.24 |
0.68 |
23.07 |
| tRNA |
2DU3 |
953!D:957!D |
U:A |
rH_1 [tWH][XXIV] |
9.69 |
39.54; 14.2 |
25.34 |
163.83 |
0.36 |
9.62 |
| tRNA |
2DU3 |
954!D:956!D |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.71 |
77.11; 41.76 |
35.36 |
-167.4 |
2.39 |
26.61 |