Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2DU5
BPC Identified: 27
Ambiguities: 0
| tRNA |
2DU5 |
902!D:970!D |
C:G |
WC [cWW][XIX] |
9.67 |
62.26; 61.54 |
0.72 |
-6.26 |
0.29 |
54.82 |
| tRNA |
2DU5 |
903!D:969!D |
C:G |
WC [cWW][XIX] |
10.84 |
47.25; 50.07 |
2.82 |
22.5 |
1.11 |
14.39 |
| tRNA |
2DU5 |
904!D:968!D |
A:U |
WC [cWW][XX] |
10.24 |
59.85; 58.43 |
1.42 |
-8.98 |
0.84 |
22.07 |
| tRNA |
2DU5 |
905!D:967!D |
G:C |
WC [cWW][XIX] |
10.88 |
53.02; 53.18 |
0.16 |
0.11 |
0.16 |
5.58 |
| tRNA |
2DU5 |
906!D:966!D |
G:C |
WC [cWW][XIX] |
10.66 |
55.21; 55.72 |
0.51 |
-10.63 |
0.08 |
14.62 |
| tRNA |
2DU5 |
907!D:965!D |
G:C |
WC [cWW][XIX] |
10.2 |
53.95; 46.48 |
7.47 |
-30.32 |
0.48 |
34.5 |
| tRNA |
2DU5 |
908!D:946!D |
U:A |
rpS(sb:O2*-N3) [cSS][-] |
6.53 |
142.77; 81.58 |
61.18 |
-61.5 |
2.14 |
18.12 |
| tRNA |
2DU5 |
909!D:913!D |
G:G |
rH_1 [tWH][VII] |
11.62 |
23.32; 33.57 |
10.25 |
170.29 |
1.87 |
13.14 |
| tRNA |
2DU5 |
910!D:924!D |
G:C |
WC [cWW][XIX] |
10.7 |
53.98; 55.46 |
1.48 |
2.92 |
0.52 |
8.19 |
| tRNA |
2DU5 |
911!D:923!D |
C:G |
WC [cWW][XIX] |
10.4 |
57.03; 55.59 |
1.44 |
-5.24 |
0.02 |
21.19 |
| tRNA |
2DU5 |
912!D:922!D |
A:U |
WC [cWW][XX] |
10.17 |
58.45; 57.69 |
0.75 |
-4.0 |
0.04 |
15.81 |
| tRNA |
2DU5 |
913!D:921!D |
G:U |
S*_2 [---][-] |
10.17 |
95.06; 10.8 |
84.25 |
-136.79 |
0.73 |
28.53 |
| tRNA |
2DU5 |
916!D:958!D |
G:A |
rS [tSS][-] |
9.4 |
80.46; 64.31 |
16.15 |
-168.71 |
0.26 |
17.36 |
| tRNA |
2DU5 |
917!D:954!D |
G:U |
fS_2 [---][-] |
9.51 |
45.24; 99.73 |
54.49 |
-162.41 |
0.39 |
14.13 |
| tRNA |
2DU5 |
918!D:955!D |
G:C |
WC [cWW][XIX] |
10.15 |
58.72; 54.6 |
4.12 |
-24.57 |
1.76 |
57.34 |
| tRNA |
2DU5 |
926!D:942!D |
G:C |
WC [cWW][XIX] |
10.17 |
52.14; 59.0 |
6.86 |
-26.58 |
0.77 |
32.78 |
| tRNA |
2DU5 |
927!D:941!D |
C:G |
WC [cWW][XIX] |
10.6 |
55.69; 55.42 |
0.27 |
-12.16 |
0.07 |
21.5 |
| tRNA |
2DU5 |
928!D:940!D |
G:C |
WC [cWW][XIX] |
10.77 |
54.46; 55.16 |
0.7 |
8.93 |
0.06 |
9.54 |
| tRNA |
2DU5 |
929!D:939!D |
G:C |
WC [cWW][XIX] |
10.71 |
54.69; 55.03 |
0.34 |
-5.51 |
0.18 |
15.26 |
| tRNA |
2DU5 |
930!D:938!D |
A:U |
WC [cWW][XX] |
10.26 |
56.33; 57.34 |
1.01 |
0.34 |
0.45 |
31.52 |
| tRNA |
2DU5 |
948!D:964!D |
C:G |
WC [cWW][XIX] |
10.87 |
51.41; 52.79 |
1.38 |
-8.88 |
0.6 |
21.67 |
| tRNA |
2DU5 |
949!D:963!D |
C:G |
WC [cWW][XIX] |
10.7 |
53.43; 54.91 |
1.48 |
-2.4 |
0.4 |
13.82 |
| tRNA |
2DU5 |
950!D:962!D |
C:G |
WC [cWW][XIX] |
10.87 |
53.18; 52.93 |
0.25 |
-1.46 |
0.18 |
5.93 |
| tRNA |
2DU5 |
951!D:961!D |
G:C |
WC [cWW][XIX] |
10.72 |
53.3; 54.4 |
1.1 |
-1.33 |
0.31 |
9.79 |
| tRNA |
2DU5 |
952!D:960!D |
G:C |
WC [cWW][XIX] |
10.34 |
56.78; 56.85 |
0.07 |
-10.23 |
1.25 |
30.79 |
| tRNA |
2DU5 |
953!D:957!D |
U:A |
rH_1 [tWH][XXIV] |
10.77 |
34.12; 3.36 |
30.76 |
-155.57 |
0.1 |
9.46 |
| tRNA |
2DU5 |
954!D:956!D |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.68 |
73.58; 36.3 |
37.28 |
-172.1 |
1.69 |
25.48 |