Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 2DU6
BPC Identified: 24
Ambiguities: 0
| tRNA |
2DU6 |
901!D:971!D |
G:C |
WC [cWW][XIX] |
9.57 |
60.28; 63.14 |
2.86 |
-6.41 |
2.55 |
55.59 |
| tRNA |
2DU6 |
902!D:970!D |
C:G |
WC [cWW][XIX] |
9.73 |
62.84; 60.75 |
2.1 |
-1.54 |
0.85 |
34.71 |
| tRNA |
2DU6 |
903!D:969!D |
C:G |
WC [cWW][XIX] |
10.95 |
50.89; 49.72 |
1.17 |
11.77 |
0.48 |
9.04 |
| tRNA |
2DU6 |
904!D:968!D |
A:U |
WC [cWW][XX] |
10.68 |
54.94; 50.2 |
4.74 |
-18.86 |
0.49 |
29.46 |
| tRNA |
2DU6 |
905!D:967!D |
G:C |
WC [cWW][XIX] |
10.97 |
52.18; 51.91 |
0.27 |
-6.64 |
0.05 |
7.4 |
| tRNA |
2DU6 |
906!D:966!D |
G:C |
WC [cWW][XIX] |
10.58 |
54.95; 56.7 |
1.75 |
-7.55 |
0.24 |
15.38 |
| tRNA |
2DU6 |
907!D:965!D |
G:C |
WC [cWW][XIX] |
10.26 |
54.55; 47.39 |
7.16 |
-26.88 |
0.14 |
35.54 |
| tRNA |
2DU6 |
910!D:924!D |
G:C |
WC [cWW][XIX] |
10.6 |
54.79; 55.91 |
1.12 |
2.64 |
0.22 |
16.41 |
| tRNA |
2DU6 |
911!D:923!D |
C:G |
WC [cWW][XIX] |
10.36 |
57.08; 56.64 |
0.44 |
-1.94 |
0.38 |
18.25 |
| tRNA |
2DU6 |
912!D:922!D |
A:U |
WC [cWW][XX] |
10.35 |
57.44; 55.07 |
2.37 |
-9.89 |
0.3 |
19.94 |
| tRNA |
2DU6 |
916!D:958!D |
G:A |
rS [tSS][-] |
8.86 |
87.38; 67.49 |
19.89 |
-178.94 |
0.2 |
7.7 |
| tRNA |
2DU6 |
917!D:954!D |
G:U |
fS_2 [---][-] |
9.36 |
44.35; 105.31 |
60.96 |
-158.19 |
0.92 |
19.19 |
| tRNA |
2DU6 |
918!D:955!D |
G:C |
WC [cWW][XIX] |
10.16 |
58.9; 52.9 |
6.0 |
-27.95 |
2.04 |
62.48 |
| tRNA |
2DU6 |
926!D:942!D |
G:C |
WC [cWW][XIX] |
10.1 |
52.29; 60.8 |
8.51 |
-19.2 |
0.32 |
45.29 |
| tRNA |
2DU6 |
927!D:941!D |
C:G |
WC [cWW][XIX] |
10.32 |
57.07; 57.2 |
0.13 |
-7.89 |
0.51 |
38.16 |
| tRNA |
2DU6 |
928!D:940!D |
G:C |
WC [cWW][XIX] |
10.67 |
54.79; 56.4 |
1.61 |
4.63 |
0.09 |
14.23 |
| tRNA |
2DU6 |
929!D:939!D |
G:C |
WC [cWW][XIX] |
10.5 |
56.41; 56.58 |
0.16 |
-4.04 |
0.48 |
28.58 |
| tRNA |
2DU6 |
930!D:938!D |
A:U |
WC [cWW][XX] |
10.23 |
60.08; 57.43 |
2.66 |
-4.11 |
0.49 |
21.17 |
| tRNA |
2DU6 |
948!D:964!D |
C:G |
WC [cWW][XIX] |
10.83 |
53.18; 53.04 |
0.15 |
-3.82 |
0.74 |
17.64 |
| tRNA |
2DU6 |
949!D:963!D |
C:G |
WC [cWW][XIX] |
10.68 |
52.67; 54.4 |
1.73 |
5.81 |
0.82 |
6.1 |
| tRNA |
2DU6 |
950!D:962!D |
C:G |
WC [cWW][XIX] |
10.84 |
53.34; 53.33 |
0.01 |
1.45 |
0.45 |
3.85 |
| tRNA |
2DU6 |
951!D:961!D |
G:C |
WC [cWW][XIX] |
10.76 |
53.62; 54.13 |
0.51 |
0.13 |
0.35 |
11.8 |
| tRNA |
2DU6 |
952!D:960!D |
G:C |
WC [cWW][XIX] |
10.18 |
55.5; 63.54 |
8.04 |
-12.77 |
1.09 |
31.38 |
| tRNA |
2DU6 |
953!D:957!D |
U:A |
rH_1 [tWH][XXIV] |
10.77 |
33.58; 4.4 |
29.18 |
-137.96 |
0.08 |
12.21 |